Evidence map›Paper›PMID 35760837›Full record

ArticleNature microbiology2022

Genomes of six viruses that infect Asgard archaea from deep-sea sediments.

Ian M Rambo, Marguerite V Langwig, Pedro Leão, Valerie De Anda, Brett J Baker

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Bacterial and human exonucleases mediate interkingdom antiviral immunity.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. The archaeal roots of eukaryotic life.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Exploring the Archaeal Virosphere by Metagenomics.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  18. Review
  19. Diversity ofISME communications · 2024
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ian M RamboDepartment of Marine Science, The University of Texas at Austin, Port Aransas, TX, USA.ORCID http://orcid.org/0000-0002-2736-2832
Marguerite V LangwigDepartment of Marine Science, The University of Texas at Austin, Port Aransas, TX, USA.ORCID http://orcid.org/0000-0002-0247-2816
Pedro LeãoDepartment of Marine Science, The University of Texas at Austin, Port Aransas, TX, USA.ORCID http://orcid.org/0000-0001-5386-7626
Valerie De AndaDepartment of Marine Science, The University of Texas at Austin, Port Aransas, TX, USA.ORCID http://orcid.org/0000-0001-9775-0737
Brett J BakerDepartment of Marine Science, The University of Texas at Austin, Port Aransas, TX, USA. brett_baker@utexas.edu.ORCID http://orcid.org/0000-0002-5971-1021
The University of Texas at Austin · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asgard archaea are globally distributed prokaryotic microorganisms related to eukaryotes; however, viruses that infect these organisms have not been described. Here, using metagenome sequences recovered from deep-sea hydrothermal sediments, we characterize six relatively large (up to 117 kb) double-stranded DNA (dsDNA) viral genomes that infected two Asgard archaeal phyla, Lokiarchaeota and Helarchaeota. These viruses encode Caudovirales-like structural proteins, as well as proteins distinct from those described in known archaeal viruses. Their genomes contain around 1-5% of genes associated with eukaryotic nucleocytoplasmic large DNA viruses (NCLDVs) and appear to be capable of semi-autonomous genome replication, repair, epigenetic modifications and transcriptional regulation. Moreover, Helarchaeota viruses may hijack host ubiquitin systems similar to eukaryotic viruses. Genomic analysis of these Asgard viruses reveals that they contain features of both prokaryotic and eukaryotic viruses, and provides insights into their potential infection and host interaction mechanisms.

Indexed as

ArchaeaVirusesEukaryotaGenome, ArchaealMetagenomePhylogeny

Identifiers

PMID35760837
OpenAlexW4283706528

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.