Evidence map›Paper›PMID 35760099›Full record

ReviewThe Journal of biological chemistry2022

Methodological advances and strategies for high resolution structure determination of cellular protein aggregates.

Anna Schaefer, Dalia Naser, Bruna Siebeneichler, Michael V Tarasca, Elizabeth M Meiering

Open access · goldAbstract readReview
In one paragraph

Review in The Journal of biological chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Communications chemistry · 2023
    Article
  4. Fundamentals of HDX-MS.Essays in biochemistry · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anna SchaeferDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada.
Dalia NaserDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada.
Bruna SiebeneichlerDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada.
Michael V TarascaDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada.
Elizabeth M MeieringDepartment of Chemistry, University of Waterloo, Waterloo, Ontario, Canada. Electronic address: meiering@uwaterloo.ca.
University of Waterloo · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aggregation of proteins is at the nexus of molecular processes crucial to aging, disease, and employing proteins for biotechnology and medical applications. There has been much recent progress in determining the structural features of protein aggregates that form in cells; yet, owing to prevalent heterogeneity in aggregation, many aspects remain obscure and often experimentally intractable to define. Here, we review recent results of structural studies for cell-derived aggregates of normally globular proteins, with a focus on high-resolution methods for their analysis and prediction. Complementary results obtained by solid-state NMR spectroscopy, FTIR spectroscopy and microspectroscopy, cryo-EM, and amide hydrogen/deuterium exchange measured by NMR and mass spectrometry, applied to bacterial inclusion bodies and disease inclusions, are uncovering novel information on in-cell aggregation patterns as well as great diversity in the structural features of useful and aberrant protein aggregates. Using these advances as a guide, this review aims to advise the reader on which combination of approaches may be the most appropriate to apply to their unique system.

Indexed as

Protein AggregatesProtein Aggregation, PathologicalProteinsAmidesDeuterium Exchange MeasurementHumansHydrogenProtein ConformationAmidesHydrogenProtein AggregatesProteinscellular aggregate structureFTIRhydrogen–deuterium exchangehydrogen exchange mass spectrometryinclusion bodyNMRprotein aggregationsolid state NMR

Identifiers

PMID35760099
PMCPMC9396402
OpenAlexW4283446760

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.