Evidence map›Paper›PMID 35758800›Full record

ArticleBioinformatics (Oxford, England)2022

Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia.

Alastair M Kilpatrick, Farzana Rahman, Audra Anjum, Sayane Shome, K M Salim Andalib, Shrabonti Banik, Sanjana F Chowdhury, Peter Coombe, Yesid Cuesta Astroz, J Maxwell Douglas and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 20 institutions in 14 countries.

Alastair M KilpatrickCentre for Regenerative Medicine, University of Edinburgh, Edinburgh, UK.
Farzana RahmanFaculty of Science, Engineering and Computing, Kingston University, London, UK.
Audra AnjumOffice of Instructional Innovation, Ohio University, Athens, OH, USA.
Sayane ShomeDepartment of Anesthesiology, Perioperative and Pain Medicine, Stanford School of Medicine, Stanford University, Stanford, CA, USA.
K M Salim AndalibISCB Regional Student Group Bangladesh, Dhaka, Bangladesh.
Shrabonti BanikFaculty of Veterinary, Animal and Biomedical Sciences, Sylhet Agricultural University, Sylhet, Bangladesh.
Sanjana F ChowdhuryBCSIR Dhaka Laboratory, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
Peter CoombeWikipedia Volunteer, San Francisco, CA, USA.
Yesid Cuesta AstrozColombian Institute of Tropical Medicine, CES University, Medellín, Colombia.
J Maxwell DouglasDepartment of Molecular Oncology, BC Cancer Agency, Vancouver, BC, Canada.
Pradeep ErantiUMRS-1124, INSERM, Université de Paris, Paris, France.
Aleyna D KiranDepartment of Bioengineering, Ege University, Bornova, Turkey.
Sachendra KumarIISc Mathematics Initiative, Indian Institute of Science, Bengaluru, India.
Hyeri LimDepartment of Biomedical Data Intelligence, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Valentina LorenziWellcome Sanger Institute, Hinxton, Cambridge, UK.
Tiago LubianaSchool of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.
Sakib MahmudBiotechnology and Genetic Engineering Discipline, Khulna University, Khulna, Bangladesh.
Rafael PucheGenetics and Forensic Studies Unit, Venezuelan Institute of Scientific Research (IVIC), Caracas, Venezuela.
Agnieszka RybarczykInstitute of Computing Science, Poznan University of Technology, Poznan, Poland.
Syed Muktadir Al SiumBCSIR Dhaka Laboratory, Bangladesh Council of Scientific and Industrial Research (BCSIR), Dhaka, Bangladesh.
David TwesigomweSydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa.
Tomasz ZokInstitute of Computing Science, Poznan University of Technology, Poznan, Poland.
Christine A OrengoInstitute of Structural and Molecular Biology, University College London, London, UK.
Iddo FriedbergProgram in Bioinformatics and Computational Biology, Iowa State University, Ames, IA, USA.
Janet F KelsoMax Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
Lonnie WelchSchool of Electrical Engineering and Computer Science, Ohio University, Athens, OH, USA.
Bangladesh Council of Scientific and Industrial Research · BDOhio University · USPoznań University of Technology · PLBC Cancer Agency · CABRAC · BDEge University · TRIndian Institute of Science Bangalore · INInstitute of Structural and Molecular Biology · GBInstituto Colombiano de Medicina Tropical · COInstituto Venezolano de Investigaciones Científicas · VEIowa State University · USKhulna University · BDKingston University · GBKyoto University · JPMax Planck Institute for Evolutionary Anthropology · DEMRC Centre for Regenerative Medicine · GBNational Health Laboratory Service · ZARonin Institute · USStanford Medicine · USSylhet Agricultural University · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

motivationWikipedia is one of the most important channels for the public communication of science and is frequently accessed as an educational resource in computational biology. Joint efforts between the International Society for Computational Biology (ISCB) and the Computational Biology taskforce of WikiProject Molecular Biology (a group of expert Wikipedia editors) have considerably improved computational biology representation on Wikipedia in recent years. However, there is still an urgent need for further improvement in quality, especially when compared to related scientific fields such as genetics and medicine. Facilitating involvement of members from ISCB Communities of Special Interest (COSIs) would improve a vital open education resource in computational biology, additionally allowing COSIs to provide a quality educational resource highly specific to their subfield.

resultsWe generate a list of around 1500 English Wikipedia articles relating to computational biology and describe the development of a binary COSI-Article matrix, linking COSIs to relevant articles and thereby defining domain-specific open educational resources. Our analysis of the COSI-Article matrix data provides a quantitative assessment of computational biology representation on Wikipedia against other fields and at a COSI-specific level. Furthermore, we conducted similarity analysis and subsequent clustering of COSI-Article data to provide insight into potential relationships between COSIs. Finally, based on our analysis, we suggest courses of action to improve the quality of computational biology representation on Wikipedia.

Indexed as

Computational BiologyCluster Analysis

Identifiers

PMID35758800
PMCPMC9235509
OpenAlexW4225351187

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.