Evidence map›Paper›PMID 35758798›Full record

ArticleBioinformatics (Oxford, England)2022

Synthetic-to-real: instance segmentation of clinical cluster cells with unlabeled synthetic training.

Meng Zhao, Siyu Wang, Fan Shi, Chen Jia, Xuguo Sun, Shengyong Chen

Open access · hybridAbstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Meng ZhaoEngineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology, Tianjin 300384, China.
Siyu WangEngineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology, Tianjin 300384, China.
Fan ShiEngineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology, Tianjin 300384, China.
Chen JiaEngineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology, Tianjin 300384, China.
Xuguo SunSchool of Medical Laboratory, Tianjin Medical University, Tianjin 300204, China.
Shengyong ChenEngineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology, Tianjin 300384, China.
Tianjin University of Technology · CNTianjin Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

motivationThe presence of tumor cell clusters in pleural effusion may be a signal of cancer metastasis. The instance segmentation of single cell from cell clusters plays a pivotal role in cluster cell analysis. However, current cell segmentation methods perform poorly for cluster cells due to the overlapping/touching characters of clusters, multiple instance properties of cells, and the poor generalization ability of the models.

resultsIn this article, we propose a contour constraint instance segmentation framework (CC framework) for cluster cells based on a cluster cell combination enhancement module. The framework can accurately locate each instance from cluster cells and realize high-precision contour segmentation under a few samples. Specifically, we propose the contour attention constraint module to alleviate over- and under-segmentation among individual cell-instance boundaries. In addition, to evaluate the framework, we construct a pleural effusion cluster cell dataset including 197 high-quality samples. The quantitative results show that the numeric result of APmask is > 90%, a more than 10% increase compared with state-of-the-art semantic segmentation algorithms. From the qualitative results, we can observe that our method rarely has segmentation errors.

Indexed as

AlgorithmsPleural EffusionCluster AnalysisHumans

Identifiers

PMID35758798
PMCPMC9235483
OpenAlexW4225772891

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.