ArticleDatabase : the journal of biological databases and curation2022
GinkgoDB: an ecological genome database for the living fossil, Ginkgo biloba.
Article in Database : the journal of biological databases and curation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed.
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- Chromosomal-scale and haplotype-resolved genome assembly of the first Trinitario hybrid cacao ICS 1.Scientific data · 2026Article
- DCA-UNet: A Cross-Modal Ginkgo Crown Recognition Method Based on Multi-Source Data.Plants (Basel, Switzerland) · 2026Article
- Functional identification of two cytochrome P450 enzymes involved in diterpenoid oxidation inFrontiers in plant science · 2026Article
- Evolutionary analysis of the Dof family in plants and identification of its members in tobacco.Frontiers in plant science · 2026Article
- Multiple independent acquisitions of a metallophore-synthesis gene by plants through horizontal microbial gene transfer.Nature communications · 2025Article
- Evolution of NAC transcription factors from early land plants to domesticated crops.Plant & cell physiology · 2025Article
- Plastome data provides new insights into population differentiation and evolution of Ginkgo in the Sichuan Basin of China.BMC plant biology · 2025Article
- Genome-Wide Study of Plant-Specific PLATZ Transcription Factors and Functional Analysis ofPlants (Basel, Switzerland) · 2025Article
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- Insights into the conservation and diversification of the molecular functions of YTHDF proteins.PLoS genetics · 2023Article
- Analysis of polycomb repressive complex 2 (PRC2) subunits in Picea abies with a focus on embryo development.BMC plant biology · 2023Article
- Arabidopsis nicotianamine synthases comprise a common core-NAS domain fused to a variable autoinhibitory C terminus.The Journal of biological chemistry · 2023Article
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4 authors.
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Abstract
Although an increasing number of species-specific databases have been constructed to facilitate the global research community, comprehensive databases remain rare with multidimensional research resources rather than genomic data solely, in particular for non-model species. Here we introduced GinkgoDB, the ecological genome database for the world-renowned living fossil, Ginkgo biloba L., a tree species with extreme longevity, exceptional resistance, global landscape application and dioecy. The present version of GinkgoDB consists of four modules of genome, occurrence, quadrat and gallery. The genome module includes two versions of chromosome-level assembled genomes with high-quality annotation, expression profiles of each sex for different tissues and variants from 545 ginkgo genomes. A suite of tools were also deployed online for search, blast and further analyses. The occurrence module contains distribution information of over one million records across the world with an emphasis on 8926 individual-level tagged trees with phenotypic trait data in eastern Asia. The quadrat module provides monitoring data of both species and habitats from 27 plots of natural ginkgo forests and periodic data of functional traits measured for the entire plant communities. The gallery module collects field morphological photos and scanned phenotypic images of various ginkgo materials. GinkgoDB showcases a comprehensive and persistently growing database for a single non-model species. Database URL: https://ginkgo.zju.edu.cn/.
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