Evidence map›Paper›PMID 35757168›Full record

ArticlePeerJ2022

Adapting mark-recapture methods to estimating accepted species-level diversity: a case study with terrestrial Gastropoda.

Gary Rosenberg, Kurt Auffenberg, Ruud Bank, Rüdiger Bieler, Philippe Bouchet, David Herbert, Frank Köhler, Thomas A Neubauer, Eike Neubert, Barna Páll-Gergely and 2 more

Abstract read
In one paragraph

Article in PeerJ, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Gary RosenbergMalacology Department, Academy of Natural Sciences, Philadelphia, Pennsylvania, United States.ORCID 0000-0002-2558-7640
Kurt AuffenbergFlorida Museum of Natural History, University of Florida, Gainesville, Florida, United States.
Ruud BankMedical Center Groningen, University of Groningen, Groningen, Netherlands.
Rüdiger BielerNegaunee Integrative Research Center, Field Museum of Natural History, Chicago, Illinois, United States.ORCID 0000-0002-9554-1947
Philippe BouchetInstitut Systématique Evolution Biodiversité, Muséum National d'Histoire Naturelle, Paris, France.
David HerbertDepartment of Natural Sciences, National Museum of Wales, Cardiff, United Kingdom.
Frank KöhlerMalacology Department, Australian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Thomas A NeubauerDepartment of Animal Ecology and Systematics, Justus Liebig University, Giessen, Germany.
Eike NeubertNatural History Museum Bern, Bern, Switzerland.
Barna Páll-GergelyPlant Protection Institute, Centre for Agricultural Research, Budapest, Hungary.ORCID 0000-0002-6167-7221
Ira RichlingStuttgart State Museum of Natural History, Stuttgart, Germany.
Simon SchneiderCASP, Cambridge, United Kingdom.ORCID 0000-0001-6493-357X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We introduce a new method of estimating accepted species diversity by adapting mark-recapture methods to comparisons of taxonomic databases. A taxonomic database should become more complete over time, so the error bar on an estimate of its completeness and the known diversity of the taxon it treats will decrease. Independent databases can be correlated, so we use the time course of estimates comparing them to understand the effect of correlation. If a later estimate is significantly larger than an earlier one, the databases are positively correlated, if it is significantly smaller, they are negatively correlated, and if the estimate remains roughly constant, then the correlations have averaged out. We tested this method by estimating how complete MolluscaBase is for accepted names of terrestrial gastropods. Using random samples of names from an independent database, we determined whether each name led to a name accepted in MolluscaBase. A sample tested in August 2020 found that 16.7% of tested names were missing; one in July 2021 found 5.3% missing. MolluscaBase grew by almost 3,000 accepted species during this period, reaching 27,050 species. The estimates ranged from 28,409 ± 365 in 2021 to 29,063 ± 771 in 2020. All estimates had overlapping 95% confidence intervals, indicating that correlations between the databases did not cause significant problems. Uncertainty beyond sampling error added 475 ± 430 species, so our estimate for accepted terrestrial gastropods species at the end of 2021 is 28,895 ± 630 species. This estimate is more than 4,000 species higher than previous ones. The estimate does not account for ongoing flux of species into and out of synonymy, new discoveries, or changing taxonomic methods and concepts. The species naming curve for terrestrial gastropods is still far from reaching an asymptote, and combined with the additional uncertainties, this means that predicting how many more species might ultimately be recognized is presently not feasible. Our methods can be applied to estimate the total number of names of Recent mollusks (as opposed to names currently accepted), the known diversity of fossil mollusks, and known diversity in other phyla.

Indexed as

GastropodaAnimalsDatabases, FactualFossilsMolluscaResearch DesignBiodiversity informaticsDiversityGlobal species databasesMark-recaptureMolluscaSources of uncertaintySpecies richnessTaxonomic databasesTerrestrial gastropods

Identifiers

PMID35757168
PMCPMC9231345

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.