Evidence map›Paper›PMID 35755872›Full record

ArticlePatterns (New York, N.Y.)2022

Federated learning of molecular properties with graph neural networks in a heterogeneous setting.

Wei Zhu, Jiebo Luo, Andrew D White

Abstract read
In one paragraph

Article in Patterns (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Federated Node Classification over Distributed Ego-Networks with Secure Contrastive Embedding Sharing.Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management · 2024
    Article
  3. Federated Node Classification over Graphs with Latent Link-type Heterogeneity.Proceedings of the ... International World-Wide Web Conference. International WWW Conference · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Wei ZhuDepartment of Computer Science, University of Rochester, Rochester, NY, USA.
Jiebo LuoDepartment of Computer Science, University of Rochester, Rochester, NY, USA.
Andrew D WhiteDepartment of Chemical Engineering, University of Rochester, Rochester, NY, USA.

Funding

Learning to learn in structural biology with deep neural networksR35GM137966 · NIGMS · UNIVERSITY OF ROCHESTER · PI WHITE, ANDREW DAVID · 2020 to 2023
$1.0M
NIGMS NIH HHS R35 GM137966
6 · The paper itself

Abstract

Chemistry research has both high material and computational costs to conduct experiments. Intuitions are interested in differing classes of molecules, creating heterogeneous data that cannot be easily joined by conventional methods. This work introduces federated heterogeneous molecular learning. Federated learning allows end users to build a global model collaboratively while keeping their training data isolated. We first simulate a heterogeneous federated-learning benchmark (FedChem) by jointly performing scaffold splitting and latent Dirichlet allocation on existing datasets. Our results on FedChem show that significant learning challenges arise when working with heterogeneous molecules across clients. We then propose a method to alleviate the problem: Federated Learning by Instance reweighTing (FLIT(+)). FLIT(+) can align local training across clients. Experiments conducted on FedChem validate the advantages of this method. This work should enable a new type of collaboration for improving artificial intelligence (AI) in chemistry that mitigates concerns about sharing valuable chemical data.

Indexed as

federated learninggraph neural networkmolecular property prediction

Identifiers

PMID35755872
PMCPMC9214329

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.