Evidence map›Paper›PMID 35754516›Full record

ArticleCell genomics2022

Lumping versus splitting: How to approach defining a disease to enable accurate genomic curation.

Courtney Thaxton, Jennifer Goldstein, Marina DiStefano, Kathleen Wallace, P Dane Witmer, Melissa A Haendel, Ada Hamosh, Heidi L Rehm, Jonathan S Berg

Open access · goldAbstract read
In one paragraph

Article in Cell genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Evidence-based classification of genes implicated in craniosynostosis disorders using the ClinGen curation framework.Genetics in medicine : official journal of the American College of Medical Genetics · 2026
    Article
  3. Review
  4. What Is Precision Psychotherapy?The Journal of medicine and philosophy · 2026
    Article
  5. Article
  6. Article
  7. Evidence-based classification of genes implicated in skeletal disorders using the ClinGen curation framework.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. ClinGen recuration of hearing loss-associated genes demonstrates significant changes in gene-disease validity over time.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Courtney ThaxtonDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Jennifer GoldsteinDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Marina DiStefanoPrecision Health Program, Geisinger, Danville, PA 17822, USA.
Kathleen WallaceDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
P Dane WitmerJohns Hopkins Genomics, Johns Hopkins University, Baltimore, MD 21218, USA.
Melissa A HaendelCenter for Health AI, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Ada HamoshMcKusick-Nathans Department of Genetic Medicine, Johns Hopkins University, Baltimore, MD 21205, USA.
Heidi L RehmCenter for Genomic Medicine, Massachusetts General Hospital, Boston, MA 02114, USA.
Jonathan S BergDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
University of North Carolina at Chapel Hill · USJohns Hopkins University · USBroad Institute · USUniversity of Colorado Anschutz Medical Campus · US

Funding

The Clinical Genome Resource – Advancing genomic medicine through biocuration and expert assessment of genes and variants at scaleU24HG009650 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JONATHAN S BERG, Jessica Ezzell Hunter · 2021 to 2026
$30.0M
ClinGen AI Data Delivery SupplementU24HG006834 · NHGRI · BROAD INSTITUTE, INC. · PI Marina DiStefano, CHRISTA LESE MARTIN · 2021 to 2026
$26.7M
Resource ProjectU41HG006627 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI HAMOSH, ADA · 2012 to 2021
$18.0M
The Monarch Initiative: Linking Diseases to Model Organism ResourcesR24OD011883 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAENDEL, MELISSA A, MUNGALL, CHRISTOPHER J · 2012 to 2024
$16.0M
A Knowledge Base for Clinically Relevant Genes and VariantsU01HG007437 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BERG, JONATHAN S, EVANS, JAMES PHILIP · 2013 to 2016
$9.0M
Online Mendelian Inheritance in Man (OMIM)U24HG006627 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI HAMOSH, ADA · 2022 to 2025
$7.7M
NHGRI NIH HHS U01 HG007437NHGRI NIH HHS U24 HG006627NHGRI NIH HHS U24 HG006834NHGRI NIH HHS U24 HG009650NHGRI NIH HHS U41 HG006627NIH HHS R24 OD011883
6 · The paper itself

Abstract

The dilemma of how to categorize and classify diseases has been debated for centuries. The field of medical genetics has historically approached nosology based on clinical phenotypes observed in patients and families. Advances in genomic sequencing and understanding of genetic contributions to disease often provoke a need to reassess these classifications. The Clinical Genome Resource (ClinGen) has developed frameworks to classify the strength of evidence underlying monogenic gene-disease relationships, variant pathogenicity, and clinical actionability. It is therefore necessary to define the disease entity being evaluated, which can be challenging for genes associated with multiple conditions and/or a broad phenotypic spectrum. We therefore developed criteria to guide "lumping and splitting" decisions and improve consistency in defining monogenic gene-disease relationships. Here, we outline the precuration process, the lumping and splitting guidelines with examples, and describe the implications for clinical diagnosis, informatics, and care management.

Identifiers

PMID35754516
PMCPMC9221396
OpenAlexW4280532912

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.