Evidence map›Paper›PMID 35754340›Full record

ArticleCancer discovery2022

Drug-Induced Epigenomic Plasticity Reprograms Circadian Rhythm Regulation to Drive Prostate Cancer toward Androgen Independence.

Simon Linder, Marlous Hoogstraat, Suzan Stelloo, Nils Eickhoff, Karianne Schuurman, Hilda de Barros, Maartje Alkemade, Elise M Bekers, Tesa M Severson, Joyce Sanders and 26 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 84 citations in OpenAlex.

  1. Cambridge Neoadjuvant Cancer of the Prostate (CANCAP03): A Window Study into the Effects of Olaparib ± Degarelix in Primary Prostate Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Trial
  2. Trial
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Circadian clock and cancer.Military Medical Research · 2026
    Review
  16. Review
  17. Circadian regulator REV-ERBα is a master regulator of tumor lineage plasticity and an effective therapeutic target.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Increased ErbB2 Signaling Is an Early Adaptation to Androgen Signaling Inhibition and Persists in Castration-Resistant Prostate Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  19. Enzalutamide-Resistant STEAP4Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

36 authors at 10 institutions in 5 countries.

Simon Linder *Division of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-3315-305X
Marlous Hoogstraat *Division of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-4916-1177
Suzan StellooDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-6696-836X
Nils EickhoffDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0003-4461-1607
Karianne SchuurmanDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-9278-0571
Hilda de BarrosDivision of Urology, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0003-2102-7897
Maartje AlkemadeCore Facility Molecular Pathology and Biobanking, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0003-1177-0898
Elise M BekersDivision of Pathology, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0001-5159-1697
Tesa M SeversonDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-7568-4705
Joyce SandersDivision of Pathology, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-0551-7813
Chia-Chi Flora HuangVancouver Prostate Centre, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0002-2150-3139
Tunc MorovaVancouver Prostate Centre, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0002-4062-6185
Umut Berkay AltintasSchool of Medicine, Koç University, Istanbul, Turkey.ORCID 0000-0002-0861-5013
Liesbeth HoekmanProteomics Facility, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-3552-6390
Yongsoo KimDepartment of Pathology, Amsterdam University Medical Centers, Cancer Center Amsterdam, Amsterdam, the Netherlands.ORCID 0000-0002-2995-2131
Sylvan C BacaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-4087-8606
Martin SjöströmDepartment of Radiation Oncology, University of California, San Francisco, San Francisco, California.ORCID 0000-0002-2629-9966
Anniek ZaalbergDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0001-9573-6448
Dorine C HintzenDivision of Cell Biology, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-8132-8897
Jeroen de JongDivision of Pathology, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-3263-7626
Roelof J C KluinGenomics Core Facility, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-5133-142X
Iris de RinkGenomics Core Facility, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0003-1850-1340
Claudia GiambartolomeiDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California.ORCID 0000-0003-2786-1225
Ji-Heui SeoDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-7280-3334
Bogdan PasaniucDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California.ORCID 0000-0002-0227-2056
Maarten AltelaarProteomics Facility, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0001-5093-5945
René H MedemaDivision of Cell Biology, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-6754-0381
Felix Y FengDepartment of Radiation Oncology, University of California, San Francisco, San Francisco, California.ORCID 0000-0002-0963-7687
Amina ZoubeidiVancouver Prostate Centre, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0002-0498-142X
Matthew L FreedmanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-0151-1238
Lodewyk F A WesselsDivision of Molecular Carcinogenesis, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-1656-6995
Lisa M ButlerFreemasons Centre for Male Health and Wellbeing, Adelaide Medical School, University of Adelaide, Adelaide, South Australia, Australia.ORCID 0000-0003-2698-3220
Nathan A LackVancouver Prostate Centre, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0001-7399-5844
Henk van der PoelDivision of Urology, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-8772-1120
Andries M BergmanDivision of Oncogenomics, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0001-5223-2549
Wilbert ZwartDivision of Oncogenomics, Oncode Institute, The Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-9823-7289
Oncode Institute · NLDutch Cancer Society · NLDana-Farber Cancer Institute · USUniversity of British Columbia · CAKoç University · TRUniversity of California, Los Angeles · USUniversity of California, San Francisco · USAmsterdam University Medical Centers · NLSouth Australian Health and Medical Research Institute · AUUtrecht University · NL

Funding

Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
NCI NIH HHS T32 CA009172ZonMw 91716401
6 · The paper itself

Abstract

In prostate cancer, androgen receptor (AR)-targeting agents are very effective in various disease stages. However, therapy resistance inevitably occurs, and little is known about how tumor cells adapt to bypass AR suppression. Here, we performed integrative multiomics analyses on tissues isolated before and after 3 months of AR-targeting enzalutamide monotherapy from patients with high-risk prostate cancer enrolled in a neoadjuvant clinical trial. Transcriptomic analyses demonstrated that AR inhibition drove tumors toward a neuroendocrine-like disease state. Additionally, epigenomic profiling revealed massive enzalutamide-induced reprogramming of pioneer factor FOXA1 from inactive chromatin sites toward active cis-regulatory elements that dictate prosurvival signals. Notably, treatment-induced FOXA1 sites were enriched for the circadian clock component ARNTL. Posttreatment ARNTL levels were associated with patients' clinical outcomes, and ARNTL knockout strongly decreased prostate cancer cell growth. Our data highlight a remarkable cistromic plasticity of FOXA1 following AR-targeted therapy and revealed an acquired dependency on the circadian regulator ARNTL, a novel candidate therapeutic target. SIGNIFICANCE: Understanding how prostate cancers adapt to AR-targeted interventions is critical for identifying novel drug targets to improve the clinical management of treatment-resistant disease. Our study revealed an enzalutamide-induced epigenomic plasticity toward prosurvival signaling and uncovered the circadian regulator ARNTL as an acquired vulnerability after AR inhibition, presenting a novel lead for therapeutic development. See related commentary by Zhang et al., p. 2017. This article is highlighted in the In This Issue feature, p. 2007.

Indexed as

AndrogensProstatic Neoplasms, Castration-ResistantARNTL Transcription FactorsCell Line, TumorCircadian RhythmDrug Resistance, NeoplasmEpigenomicsHumansMaleNitrilesReceptors, AndrogenAndrogensARNTL Transcription FactorsNitrilesReceptors, Androgen

Identifiers

PMID35754340
PMCPMC7613567
OpenAlexW4283656267

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.