Evidence map›Paper›PMID 35754039›Full record

ArticleBMC plant biology2022

Transcriptome analysis provides new ideas for studying the regulation of glucose-induced lignin biosynthesis in pear calli.

Yuru Jiao, Xin Gong, Kaijie Qi, Zhihua Xie, Yanling Wang, Kaili Yuan, Qi Pan, Shaoling Zhang, Katsuhiro Shiratake, Shahrokh Khanizadeh and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Yuru JiaoCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Xin GongCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Kaijie QiCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Zhihua XieCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Yanling WangCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Kaili YuanCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Qi PanCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Shaoling ZhangCollege of Horticulture, Nanjing Agricultural University, Nanjing, China.
Katsuhiro ShiratakeLaboratory of Horticultural Science, Nagoya University, Nagoya, Japan.
Shahrokh KhanizadehElm Consulting, Genetic Research, St-Lazare, Quebec, J7T 3C2, Canada.
Shutian TaoCollege of Horticulture, Nanjing Agricultural University, Nanjing, China. taost@njau.edu.cn.
Nanjing Agricultural University · CNNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlucose can be involved in metabolic activities as a structural substance or signaling molecule and plays an important regulatory role in fruit development. Glucose metabolism is closely related to the phenylpropanoid pathway, but the specific role of glucose in regulating lignin biosynthesis in pear fruit is still unclear. The transcriptome of pear calli generated from fruit and treated with glucose was analyzed to investigate the role of glucose in lignin biosynthesis.

resultsThe treatment of exogenous glucose significantly enhanced the accumulation of lignin in pear calli. A total of 6566 differentially expressed genes were obtained by transcriptome sequencing. Glycolysis was found to be the pathway with significant changes. Many differentially expressed genes were enriched in secondary metabolic pathways, especially the phenylpropanoid pathway. Expression of structural genes (PbPAL, PbHCT, PbCOMT, PbPRX) in lignin biosynthesis was up-regulated after glucose treatment. In addition, glucose might regulate lignin biosynthesis through interactions with ABA, GA, and SA signaling. Several candidate MYB transcription factors involved in glucose-induced lignin biosynthesis have also been revealed. The qRT-PCR analyses showed that the expression pattern of PbPFP at early developmental stage in 'Dangshansuli' fruits was consistent with the trend of lignin content. Transient expression of PbPFP resulted in a significant increase of lignin content in 'Dangshansuli' fruits at 35 days after full bloom (DAB) and tobacco leaves, indicating that PbPFP (Pbr015118.1) might be associated with the enhancement of lignin biosynthesis in response to glucose treatment.

conclusionsPbPFP plays a positive role in regulating lignin biosynthesis in response to glucose treatment. This study may reveal the regulatory pathway related to lignin accumulation in pear calli induced by glucose.

Indexed as

PyrusFruitGene Expression ProfilingGene Expression Regulation, PlantGlucoseLigninPlant ProteinsTranscriptomeGlucoseLigninPlant ProteinsGlucose treatmentLigninPear calliTranscriptome analysis

Identifiers

PMID35754039
PMCPMC9235211
OpenAlexW4283579716

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.