Evidence map›Paper›PMID 35752737›Full record

ArticleScientific reports2022

Gut microbiota alternation under the intestinal epithelium-specific knockout of mouse Piga gene.

Aditi Jangid, Shinji Fukuda, Masahide Seki, Yutaka Suzuki, Todd D Taylor, Hiroshi Ohno, Tulika Prakash

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Gut Microbiome in Sepsis.Surgical infections · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Aditi JangidBioX Centre and School of Basic Sciences, Indian Institute of Technology Mandi, Kamand, Mandi, Himachal Pradesh, 175005, India.
Shinji FukudaInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan.
Masahide SekiDepartment of Computational Biology and Medical Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa Chiba, 277-8562, Japan.
Yutaka SuzukiDepartment of Computational Biology and Medical Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa Chiba, 277-8562, Japan.
Todd D TaylorLaboratory for Microbiome Sciences, RIKEN Center for Integrative Medical Sciences, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Hiroshi OhnoLaboratory for Intestinal Ecosystem, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, 230-0045, Japan.
Tulika PrakashBioX Centre and School of Basic Sciences, Indian Institute of Technology Mandi, Kamand, Mandi, Himachal Pradesh, 175005, India. tulika@iitmandi.ac.in.
RIKEN Center for Integrative Medical Sciences · JPIndian Institute of Technology Mandi · INThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crosstalk between the gut microbiota and intestinal epithelium shapes the gut environment and profoundly influences the intestinal immune homeostasis. Glycosylphosphatidylinositol anchored proteins (GPI - APs) contribute to a variety of gut-associated immune functions, including microbial surveillance and defense, and epithelial cell polarity. Properly polarised epithelial cells are essential for the establishment of the barrier function of gut epithelia. The Piga gene is one among seven genes that encode for an enzyme which is involved in the first step of GPI-anchor biosynthesis. This is the first study reporting a knockout of the intestinal epithelial cell-specific Piga gene (Piga-/-) and its association with the gut microbiota in mice using a whole metagenome shotgun-based sequencing approach. An overall reduced microbiota diversity has been observed in the Piga-/- group as compared to the control group (ANOVA p = 0.34). The taxonomic biomarkers, namely: Gammaproteobacteria (class), Enterobacterales (order), Enterobacteriaceae (family), Escherichia (genus), Proteus (genus) and Escherichia coli (species), increased more in the Piga-/- mice as compared to in the control group. Further, the pathogenic E. coli strains, namely E. coli O157:H7 str. EDL 933 (EHEC), E. coli CFT073 (UPEC) and E. coli 536 (UPEC), were found in the Piga-/- mice which also harbored virulence factor transporters. In addition, the taxa responsible for short chain fatty acid production were decreased in the Piga-/- group. The Piga-/- mice gut harbored an increased number of microbial functions responsible for the survival of pathogens in the inflamed gut environment. Our observations clearly indicate that the Piga-/- mice gut might have an overall enhancement in pathogenic behaviour and reduced capabilities beneficial to health.

Indexed as

Escherichia coli InfectionsEscherichia coli O157Gastrointestinal MicrobiomeAnimalsIntestinal MucosaIntestinesMice

Identifiers

PMID35752737
PMCPMC9233684
OpenAlexW4283463358

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.