Evidence map›Paper›PMID 35752683›Full record

ArticleArchives of virology2022

Genomic analysis of a novel active prophage of Hafnia paralvei.

Lingting Pan, Dengfeng Li, Wei Lin, Wencai Liu, Weinan Qin, Lihua Xu, Yigang Tong

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lingting PanKey Laboratory of Marine Biotechnology, School of Marine Sciences, Ningbo University, Ningbo, 315211, Zhejiang, China.
Dengfeng LiKey Laboratory of Marine Biotechnology, School of Marine Sciences, Ningbo University, Ningbo, 315211, Zhejiang, China. lidengfeng@nbu.edu.cn.ORCID http://orcid.org/0000-0002-5234-5559
Wei LinCollege of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.
Wencai LiuKey Laboratory of Marine Biotechnology, School of Marine Sciences, Ningbo University, Ningbo, 315211, Zhejiang, China.
Weinan QinKey Laboratory of Marine Biotechnology, School of Marine Sciences, Ningbo University, Ningbo, 315211, Zhejiang, China.
Lihua XuKey Laboratory of Marine Biotechnology, School of Marine Sciences, Ningbo University, Ningbo, 315211, Zhejiang, China.
Yigang TongCollege of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China. tong.yigang@gmail.com.
Ningbo University · CNBeijing University of Chemical Technology · CN

Funding

Key laboratory of marine biogenetic resources of State Oceanic Administration HY201602National key research and development program 2018YFA0903000
6 · The paper itself

Abstract

Little is known about the prophages in Hafniaceae bacteria. A novel Hafnia phage, yong2, was induced from Hafnia paralvei by treatment with mitomycin C. The phage has an elliptical head with dimensions of approximately 45 × 38 nm and a long noncontractile tail of approximately 157 × 4 nm. The complete genome of Hafnia phage yong2 is a 39,546-bp double-stranded DNA with a G+C content of 49.9%, containing 59 open reading frames (ORFs) and having at least one fixed terminus (GGGGCAGCGACA). In phylogenetic analysis, Hafnia phage yong2 clustered with four predicted Hafnia prophages and one predicted Enterobacteriaceae prophage. These prophages and members of the family Drexlerviridae together formed two distinct subclades nested within a clade, suggesting the existence of a novel class of prophages with conserved sequences and a unique evolutionary status not yet studied before in Hafniaceae and Enterobacteriaceae bacteria.

Indexed as

BacteriophagesHafniaGenome, ViralGenomicsOpen Reading FramesPhylogenyProphages

Identifiers

PMID35752683
OpenAlexW4283460694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.