Evidence map›Paper›PMID 35752625›Full record

ArticleNature communications2022

Structural mechanism of protein recognition by the FW domain of autophagy receptor Nbr1.

Jianxiu Zhang, Ying-Ying Wang, Zhao-Qian Pan, Yulu Li, Jianhua Sui, Li-Lin Du, Keqiong Ye

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Antibody screening reveals antigenic proteins involved inFrontiers in cellular and infection microbiology · 2023
    Article
  5. NBR1: The archetypal selective autophagy receptor.The Journal of cell biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Jianxiu Zhang *Key Laboratory of RNA Biology, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China.ORCID 0000-0002-1864-7510
Ying-Ying Wang *College of Life Sciences, Beijing Normal University, 100875, Beijing, China.
Zhao-Qian Pan *National Institute of Biological Sciences, 102206, Beijing, China.
Yulu LiNational Institute of Biological Sciences, 102206, Beijing, China.
Jianhua SuiNational Institute of Biological Sciences, 102206, Beijing, China.ORCID 0000-0002-1272-9662
Li-Lin DuNational Institute of Biological Sciences, 102206, Beijing, China. dulilin@nibs.ac.cn.ORCID 0000-0002-1028-7397
Keqiong YeKey Laboratory of RNA Biology, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China. yekeqiong@ibp.ac.cn.ORCID 0000-0001-6169-7049
National Institute of Biological Sciences, Beijing · CNChinese Academy of Sciences · CNHenan University of Science and Technology · CNInstitute of Biophysics · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neighbor of BRCA1 (Nbr1) is a conserved autophagy receptor that provides cargo selectivity to autophagy. The four-tryptophan (FW) domain is a signature domain of Nbr1, but its exact function remains unclear. Here, we show that Nbr1 from the filamentous fungus Chaetomium thermophilum uses its FW domain to bind the α-mannosidase Ams1, a cargo of selective autophagy in both budding yeast and fission yeast, and delivers Ams1 to the vacuole by conventional autophagy in heterologous fission yeast. The structure of the Ams1-FW complex was determined at 2.2 Å resolution by cryo-electron microscopy. The FW domain adopts an immunoglobulin-like β-sandwich structure and recognizes the quaternary structure of the Ams1 tetramer. Notably, the N-terminal di-glycine of Ams1 is specifically recognized by a conserved pocket of the FW domain. The FW domain becomes degenerated in fission yeast Nbr1, which binds Ams1 with a ZZ domain instead. Our findings illustrate the protein binding mode of the FW domain and reveal the versatility of Nbr1-mediated cargo recognition.

Indexed as

SchizosaccharomycesAutophagyCarrier ProteinsCryoelectron MicroscopyIntracellular Signaling Peptides and ProteinsProteinsSchizosaccharomyces pombe ProteinsVacuolesCarrier ProteinsIntracellular Signaling Peptides and Proteinsnbr1 protein, S pombeProteinsSchizosaccharomyces pombe Proteins

Identifiers

PMID35752625
PMCPMC9233695
OpenAlexW4283456478

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.