Evidence map›Paper›PMID 35752617›Full record

ArticleNature communications2022

Mucin induces CRISPR-Cas defense in an opportunistic pathogen.

Gabriel Magno de Freitas Almeida, Ville Hoikkala, Janne Ravantti, Noora Rantanen, Lotta-Riina Sundberg

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Unveiling Hidden Allies: In Silico Discovery of Prophages inAntibiotics (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Defense and anti-defense mechanisms of bacteria and bacteriophages.Journal of Zhejiang University. Science. B · 2024
    Article
  8. Molecular studies of phages-Frontiers in microbiology · 2023
    Article
  9. Article
  10. Review
  11. Mucosal Environment Induces Phage Susceptibility inPHAGE (New Rochelle, N.Y.) · 2022
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Gabriel Magno de Freitas Almeida *University of Jyväskylä, Department of Biological and Environmental Science and Nanoscience Center, Jyväskylä, Finland.ORCID 0000-0003-2317-5092
Ville Hoikkala *University of Jyväskylä, Department of Biological and Environmental Science and Nanoscience Center, Jyväskylä, Finland.ORCID 0000-0003-3995-3215
Janne RavanttiUniversity of Helsinki, Molecular and Integrative Biosciences Research Programme, Helsinki, Finland.
Noora RantanenUniversity of Jyväskylä, Department of Biological and Environmental Science and Nanoscience Center, Jyväskylä, Finland.
Lotta-Riina SundbergUniversity of Jyväskylä, Department of Biological and Environmental Science and Nanoscience Center, Jyväskylä, Finland. lotta-riina.sundberg@jyu.fi.ORCID 0000-0003-3510-4398
University of Jyväskylä · FIUiT The Arctic University of Norway · NOUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parasitism by bacteriophages has led to the evolution of a variety of defense mechanisms in their host bacteria. However, it is unclear what factors lead to specific defenses being deployed upon phage infection. To explore this question, we co-evolved the bacterial fish pathogen Flavobacterium columnare and its virulent phage V156 in presence and absence of a eukaryotic host signal (mucin) for sixteen weeks. The presence of mucin leads to a dramatic increase in CRISPR spacer acquisition, especially in low nutrient conditions where over 60% of colonies obtain at least one new spacer. Additionally, we show that the presence of a competitor bacterium further increases CRISPR spacer acquisition in F. columnare. These results suggest that ecological factors are important in determining defense strategies against phages, and that the phage-bacterium interactions on mucosal surfaces may select for the diversification of bacterial immune systems.

Indexed as

BacteriophagesCRISPR-Cas SystemsAnimalsFishesMucinsMucins

Identifiers

PMID35752617
PMCPMC9233685
OpenAlexW4283466262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.