Evidence map›Paper›PMID 35751592›Full record

SynthesisRheumatology (Oxford, England)2022

A genomic meta-analysis of clinical variables and their association with intrinsic molecular subsets in systemic sclerosis.

Jennifer M Franks, Diana M Toledo, Viktor Martyanov, Yue Wang, Suiyuan Huang, Tammara A Wood, Cathie Spino, Lorinda Chung, Christopher P Denton, Emma Derrett-Smith and 6 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Rheumatology (Oxford, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
  2. Trial
  3. Review
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Jennifer M FranksDepartment of Biomedical Data Science.ORCID 0000-0003-2400-5431
Diana M ToledoDepartment of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Lebanon, NH.
Viktor MartyanovDepartment of Biomedical Data Science.
Yue WangDepartment of Biomedical Data Science.
Suiyuan HuangDepartment of Biostatistics, University of Michigan, Ann Arbor, MI.
Tammara A WoodDepartment of Biomedical Data Science.
Cathie SpinoDepartment of Biostatistics, University of Michigan, Ann Arbor, MI.
Lorinda ChungPalo Alto Health Care System, Palo Alto, Stanford, CA, USA.
Christopher P DentonDivision of Medicine, University College London, London, UK.ORCID 0000-0003-3975-8938
Emma Derrett-SmithDivision of Medicine, University College London, London, UK.
Jessica K GordonHospital for Special Surgery, New York, NY.
Robert SpieraHospital for Special Surgery, New York, NY.
Robyn DomsicUniversity of Pittsburgh, Pittsburgh, PA.ORCID 0000-0002-2765-0922
Monique HinchcliffYale University, New Haven, CT.ORCID 0000-0002-8652-9890
Dinesh KhannaDepartment of Biostatistics, University of Michigan, Ann Arbor, MI.ORCID 0000-0003-1412-4453
Michael L WhitfieldDepartment of Biomedical Data Science.ORCID 0000-0002-0862-6003

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Pathogenic Wnt-beta catenin target genes in macrophages and fibrosisR01AR073270 · NIAMS · YALE UNIVERSITY · PI HINCHCLIFF, MONIQUE EVANGELINE · 2019 to 2023
$2.6M
Outcomes Research in Rheumatic DiseasesK24AR063120 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KHANNA, DINESH · 2012 to 2022
$1.6M
Quantitative Biomedical Sciences at DartmouthT32LM012204 · NLM · DARTMOUTH COLLEGE · PI TOSTESON, TOR D · 2016 to 2020
$876k
University of Michigan Autoimmunity Center of Excellence, Clinical Research ProgrUM1AI110557 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FOX, DAVID ALAN · 2014 to 2018
$543k
NCATS NIH HHS UL1 TR001863NIAID NIH HHS UM1 AI110557NIAMS NIH HHS K24 AR063120NIAMS NIH HHS R01 AR073270NLM NIH HHS T32 LM012204Wellcome Trust
6 · The paper itself

Abstract

objectivesFour intrinsic molecular subsets (inflammatory, fibroproliferative, limited, normal-like) have previously been identified in SSc and are characterized by unique gene expression signatures and pathways. The intrinsic subsets have been linked to improvement with specific therapies. Here, we investigated associations between baseline demographics and intrinsic molecular subsets in a meta-analysis of published datasets.

methodsPublicly available gene expression data from skin biopsies of 311 SSc patients measured by DNA microarray were classified into the intrinsic molecular subsets. RNA-sequencing data from 84 participants from the ASSET trial were used as a validation cohort. Baseline clinical demographics and intrinsic molecular subsets were tested for statistically significant associations.

resultsMales were more likely to be classified in the fibroproliferative subset (P = 0.0046). SSc patients who identified as African American/Black were 2.5 times more likely to be classified as fibroproliferative compared with White/Caucasian patients (P = 0.0378). ASSET participants sera positive for anti-RNA pol I and RNA pol III autoantibodies were enriched in the inflammatory subset (P = 5.8 × 10-5, P = 9.3 × 10-5, respectively), while anti-Scl-70 was enriched in the fibroproliferative subset. Mean modified Rodnan Skin Score (mRSS) was statistically higher in the inflammatory and fibroproliferative subsets compared with normal-like (P = 0.0027). The average disease duration for inflammatory subset was less than fibroproliferative and normal-like intrinsic subsets (P = 8.8 × 10-4).

conclusionsWe identified multiple statistically significant differences in baseline demographics between the intrinsic subsets that may represent underlying features of disease pathogenesis (e.g. chronological stages of fibrosis) and have implications for treatments that are more likely to work in certain SSc populations.

Indexed as

Scleroderma, SystemicGenomicsHumansMaleOligonucleotide Array Sequence AnalysisRNASkinTranscriptomeRNAclinical associationsgene expressionmachine learningmeta-analysisSSc

Identifiers

PMID35751592
PMCPMC9788818

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.