Evidence map›Paper›PMID 35751020›Full record

ArticleBMC genomics2022

Whole genome sequencing analysis to evaluate the influence of T2DM on polymorphisms associated with drug resistance in M. tuberculosis.

Gustavo Adolfo Bermudez-Hernández, Damián Eduardo Pérez-Martínez, Carlos Francisco Madrazo-Moya, Irving Cancino-Muñoz, Iñaki Comas, Roberto Zenteno-Cuevas

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Influence of Diabetes Mellitus on the Development of Multidrug-Resistant Tuberculosis (MDR-TB) in Relation With Genetic Mutations ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Gustavo Adolfo Bermudez-HernándezHealth Sciences Doctoral Program. Health Sciences Institute, University of Veracruz, Jalapa, Mexico.
Damián Eduardo Pérez-MartínezHealth Sciences Doctoral Program. Health Sciences Institute, University of Veracruz, Jalapa, Mexico.
Carlos Francisco Madrazo-MoyaBiomedical Institute of Valencia IBV-CSIC, Valencia, Spain.
Irving Cancino-MuñozBiomedical Institute of Valencia IBV-CSIC, Valencia, Spain.
Iñaki ComasBiomedical Institute of Valencia IBV-CSIC, Valencia, Spain.
Roberto Zenteno-CuevasPublic Health Institute, University of Veracruz, Av. Luis Castelazo Ayala S/N, Col. Industrial Ánimas. Xalapa, A.P. 57, Veracruz, 91190, México. robzencue@gmail.com.
Universidad Veracruzana · MXInstituto de Biomedicina de Valencia · ESCentro de Investigación Biomédica en Red de Epidemiología y Salud Pública · ES

Funding

Consejo Nacional de Ciencia y Tecnología 710466Consejo Nacional de Ciencia y Tecnología A1-S-22956
6 · The paper itself

Abstract

backgroundType 2 diabetes mellitus (T2DM) has been associated with treatment failure, and the development of drug resistance in tuberculosis (TB). Also, whole-genome sequencing has provided a better understanding and allowed the growth of knowledge about polymorphisms in genes associated with drug resistance. Considering the above, this study analyzes genome sequences to evaluate the influence of type 2 diabetes mellitus in the development of mutations related to tuberculosis drug resistance. M. tuberculosis isolates from individuals with (n = 74), and without (n = 74) type 2 diabetes mellitus was recovered from online repositories, and further analyzed.

resultsThe results showed the presence of 431 SNPs with similar proportions between diabetics, and non-diabetics individuals (48% vs. 52%), but with no significant relationship. A greater number of mutations associated with rifampicin resistance was observed in the T2DM-TB individuals (23.2% vs. 16%), and the exclusive presence of rpoBQ432L, rpoBQ432P, rpoBS441L, and rpoBH445L variants. While these variants are not private to T2DM-TB cases they are globally rare highlighting a potential role of T2DM. The phylogenetic analysis showed 12 sublineages, being 4.1.1.3, and 4.1.2.1 the most prevalent in T2DM-TB individuals but not differing from those most prevalent in their geographic location. Four clonal complexes were found, however, no significant relationship with T2DM was observed. Samples size and potential sampling biases prevented us to look for significant associations.

conclusionsThe occurrence of globally rare rifampicin variants identified only in isolates from individuals with T2DM could be due to the hyperglycemic environment within the host. Therefore, further studies about the dynamics of SNPs' generation associated with antibiotic resistance in patients with diabetes mellitus are necessary.

Indexed as

Diabetes Mellitus, Type 2Mycobacterium tuberculosisTuberculosisTuberculosis, Multidrug-ResistantAntitubercular AgentsDrug Resistance, Multiple, BacterialHumansMicrobial Sensitivity TestsPhylogenyPolymorphism, Single NucleotideRifampinWhole Genome SequencingAntitubercular AgentsRifampinDiabetesDrug resistancePolymorphismsTuberculosis

Identifiers

PMID35751020
PMCPMC9229755
OpenAlexW4283387062

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.