Evidence map›Paper›PMID 35750663›Full record

ArticleNature communications2022

Insights into the mechanism of action of the arbitrium communication system in SPbeta phages.

Francisca Gallego Del Sol, Nuria Quiles-Puchalt, Aisling Brady, José R Penadés, Alberto Marina

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
  2. Review
  3. Article
  4. Prophage: agent provocateur?Archives of microbiology · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Large Roles of Small Proteins.Annual review of microbiology · 2024
    Review
  10. Diversity and structural-functional insights of alpha-solenoid proteins.Protein science : a publication of the Protein Society · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Francisca Gallego Del SolInstituto de Biomedicina de Valencia (IBV), CSIC and CIBER de Enfermedades Raras (CIBERER), Valencia, Spain.ORCID 0000-0001-9862-4505
Nuria Quiles-PuchaltMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK.
Aisling BradyMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK.ORCID 0000-0001-5177-4813
José R PenadésMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK. j.penades@imperial.ac.uk.ORCID 0000-0002-6439-5262
Alberto MarinaInstituto de Biomedicina de Valencia (IBV), CSIC and CIBER de Enfermedades Raras (CIBERER), Valencia, Spain. amarina@ibv.csic.es.ORCID 0000-0002-1334-5273
Centre for Biomedical Network Research on Rare Diseases · ESImperial College London · GBNIHR Imperial Biomedical Research Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/N002873/1Biotechnology and Biological Sciences Research Council BB/S003835/1Biotechnology and Biological Sciences Research Council BB/V002376/1Medical Research Council MR/M003876/1Medical Research Council MR/S00940X/1Medical Research Council MR/S00940X/2Medical Research Council MR/V000772/1Wellcome TrustWellcome Trust 201531/Z/16/Z
6 · The paper itself

Abstract

The arbitrium system is employed by phages of the SPbeta family to communicate with their progeny during infection to decide either to follow the lytic or the lysogenic cycle. The system is controlled by a peptide, AimP, that binds to the regulator AimR, inhibiting its DNA-binding activity and expression of aimX. Although the structure of AimR has been elucidated for phages SPβ and phi3T, there is still controversy regarding the molecular mechanism of AimR function, with two different proposed models for SPβ. In this study, we deepen our understanding of the system by solving the structure of an additional AimR that shows chimerical characteristics with the SPβ receptor. The crystal structures of this AimR (apo, AimP-bound and DNA-bound) together with in vitro and in vivo analyses confirm a mechanism of action by AimP-induced conformational restriction, shedding light on peptide specificity and cross regulation with relevant biological implications.

Indexed as

Bacillus PhagesBacteriophagesCommunicationDNALysogenyPeptidesDNAPeptides

Identifiers

PMID35750663
PMCPMC9232636
OpenAlexW4283400520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.