Evidence map›Paper›PMID 35746784›Full record

ArticleViruses2022

Virome of Grapevine Germplasm from the Anapa Ampelographic Collection (Russia).

Darya Shvets, Elena Porotikova, Kirill Sandomirsky, Svetlana Vinogradova

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. In-depth population genetic study ofFrontiers in plant science · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Complete Genome Characterization ofPlants (Basel, Switzerland) · 2023
    Article
  9. The First Virome of a Russian Vineyard.Plants (Basel, Switzerland) · 2023
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Darya ShvetsInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky, Prospect 33, 119071 Moscow, Russia.ORCID 0000-0002-0273-0934
Elena PorotikovaInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky, Prospect 33, 119071 Moscow, Russia.
Kirill SandomirskyInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky, Prospect 33, 119071 Moscow, Russia.ORCID 0000-0003-0746-3246
Svetlana VinogradovaInstitute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky, Prospect 33, 119071 Moscow, Russia.ORCID 0000-0002-7692-0765
Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Grapevine germplasm collections are unique repositories of grape cultivars; therefore, it is necessary to minimize their infection with pathogens, including viruses, and develop various programs to maintain them in a virus-free state. In our study, we examined the virome of the largest Russian grapevine germplasm collection, the Anapa Ampelographic Collection, using high-throughput sequencing of total RNAs. As a result of bioinformatics analysis and validation of its results by reverse transcription PCR (RT-PCR) and quantitative RT-PCR (RT-qPCR), we identified 20 viruses and 3 viroids in 47 libraries. All samples were infected with 2 to 12 viruses and viroids, including those that cause economically significant diseases: leafroll, fleck, and rugose wood complex. For the first time in Russia, we detected Grapevine virus B (GVB), Grapevine virus F (GVF), Grapevine asteroid mosaic-associated virus (GAMaV), Grapevine Red Globe virus (GRGV), Grapevine satellite virus (GV-Sat), Grapevine virga-like virus (GVLV), Grapevine-associated jivivirus 1 (GaJV-1) and Vitis cryptic virus (VCV). A new putative representative of the genus

Indexed as

RNA VirusesTymoviridaeViroidsVitisPlant DiseasesViromeAnapa Ampelographic Collectiongermplasmgrapevinehigh-throughput sequencingnovel virustotal RNAvalidationvirome

Identifiers

PMID35746784
PMCPMC9230720
OpenAlexW4283159957

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.