Evidence map›Paper›PMID 35743732›Full record

ArticleJournal of personalized medicine2022

Development of a Machine Learning Model to Predict Non-Durable Response to Anti-TNF Therapy in Crohn's Disease Using Transcriptome Imputed from Genotypes.

Soo Kyung Park, Yea Bean Kim, Sangsoo Kim, Chil Woo Lee, Chang Hwan Choi, Sang-Bum Kang, Tae Oh Kim, Ki Bae Bang, Jaeyoung Chun, Jae Myung Cha and 5 more

Open access · goldAbstract read
In one paragraph

Article in Journal of personalized medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Pharmacogenomics of TNF inhibitors.Frontiers in immunology · 2025
    Review
  9. Review
  10. Review
  11. Review
  12. Challenges in IBD Research 2024: Precision Medicine.Inflammatory bowel diseases · 2024
    Review
  13. Article
  14. Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 1 country.

Soo Kyung ParkDivision of Gastroenterology, Department of Internal Medicine and Inflammatory Bowel Disease Center, Kangbuk Samsung Hospital, School of Medicine, Sungkyunkwan University, Seoul 03181, Korea.
Yea Bean KimDepartment of Bioinformatics, Soongsil University, Seoul 06978, Korea.
Sangsoo KimDepartment of Bioinformatics, Soongsil University, Seoul 06978, Korea.ORCID 0000-0001-9836-9823
Chil Woo LeeMedical Research Institute, Kangbuk Samsung Hospital, School of Medicine, Sungkyunkwan University, Seoul 03181, Korea.ORCID 0000-0002-2676-7002
Chang Hwan ChoiDepartment of Internal Medicine, College of Medicine, Chung-Ang University, Seoul 06973, Korea.
Sang-Bum KangDepartment of Internal Medicine, Daejeon St. Mary's Hospital, College of Medicine, Catholic University, Daejeon 34943, Korea.ORCID 0000-0002-1946-7896
Tae Oh KimDepartment of Internal Medicine, Haeundae Paik Hospital, College of Medicine, Inje University, Busan 48108, Korea.
Ki Bae BangDepartment of Internal Medicine, College of Medicine, Dankook University, Cheonan 31116, Korea.ORCID 0000-0002-9961-9318
Jaeyoung ChunDepartment of Internal Medicine, Gangnam Severance Hospital, College of Medicine, Yonsei University, Seoul 06273, Korea.ORCID 0000-0002-4212-0380
Jae Myung ChaDepartment of Internal Medicine, Kyung Hee University Hospital at Gang Dong, College of Medicine, Kyung Hee University, Seoul 05278, Korea.
Jong Pil ImDepartment of Internal Medicine and Liver Research Institute, College of Medicine, Seoul National University, Seoul 03080, Korea.ORCID 0000-0003-1584-0160
Min Suk KimDepartment of Human Intelligence and Robot Engineering, Sangmyung University, Cheonan 31066, Korea.ORCID 0000-0003-4519-1683
Kwang Sung AhnFunctional Genome Institute, PDXen Biosystems Inc., Suwon 16488, Korea.
Seon-Young KimPersonalized Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Korea.ORCID 0000-0002-1030-7730
Dong Il ParkDivision of Gastroenterology, Department of Internal Medicine and Inflammatory Bowel Disease Center, Kangbuk Samsung Hospital, School of Medicine, Sungkyunkwan University, Seoul 03181, Korea.
Kangbuk Samsung Hospital · KRSoongsil University · KRChung-Ang University · KRDankook University · KRInje University Haeundae Paik Hospital · KRKyung Hee University Hospital at Gangdong · KRSangmyung University · KRSeoul National University · KRThe Catholic University of Korea Daejeon St. Mary's Hospital · KRYonsei University · KR

Funding

National Research Foundation of Korea NRF 2020R1A2B5B02002259
6 · The paper itself

Abstract

Almost half of patients show no primary or secondary response to monoclonal anti-tumor necrosis factor α (anti-TNF) antibody treatment for inflammatory bowel disease (IBD). Thus, the exact mechanisms of a non-durable response (NDR) remain inadequately defined. We used our genome-wide genotype data to impute expression values as features in training machine learning models to predict a NDR. Blood samples from various IBD cohorts were used for genotyping with the Korea Biobank Array. A total of 234 patients with Crohn's disease (CD) who received their first anti-TNF therapy were enrolled. The expression profiles of 6294 genes in whole-blood tissue imputed from the genotype data were combined with clinical parameters to train a logistic model to predict the NDR. The top two and three most significant features were genetic features (

Indexed as

anti-TNFCrohn’s diseasegenetic featuresgenotype

Identifiers

PMID35743732
PMCPMC9224874
OpenAlexW4281848696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.