Evidence map›Paper›PMID 35741755›Full record

ArticleGenes2022

The Value of the Stemness Index in Ovarian Cancer Prognosis.

Hongjun Yuan, Qian Yu, Jianyu Pang, Yongzhi Chen, Miaomiao Sheng, Wenru Tang

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

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  12. Identifying Explainable Machine Learning Models and a Novel SFRP2International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hongjun YuanLaboratory of Molecular Genetics of Aging & Tumor, Medical School, Kunming University of Science and Technology, Kunming 650032, China.
Qian YuLaboratory of Molecular Genetics of Aging & Tumor, Medical School, Kunming University of Science and Technology, Kunming 650032, China.
Jianyu PangLaboratory of Molecular Genetics of Aging & Tumor, Medical School, Kunming University of Science and Technology, Kunming 650032, China.
Yongzhi ChenLaboratory of Molecular Genetics of Aging & Tumor, Medical School, Kunming University of Science and Technology, Kunming 650032, China.
Miaomiao ShengLaboratory of Molecular Genetics of Aging & Tumor, Medical School, Kunming University of Science and Technology, Kunming 650032, China.
Wenru TangLaboratory of Molecular Genetics of Aging & Tumor, Medical School, Kunming University of Science and Technology, Kunming 650032, China.
Kunming University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ovarian cancer (OC) is one of the most common gynecological malignancies. It is associated with a difficult diagnosis and poor prognosis. Our study aimed to analyze tumor stemness to determine the prognosis feature of patients with OC. At this job, we selected the gene expression and the clinical profiles of patients with OC in the TCGA database. We calculated the stemness index of each patient using the one-class logistic regression (OCLR) algorithm and performed correlation analysis with immune infiltration. We used consensus clustering methods to classify OC patients into different stemness subtypes and compared the differences in immune infiltration between them. Finally, we established a prognostic signature by Cox and LASSO regression analysis. We found a significant negative correlation between a high stemness index and immune score. Pathway analysis indicated that the differentially expressed genes (DEGs) from the low- and high-mRNAsi groups were enriched in multiple functions and pathways, such as protein digestion and absorption, the PI3K-Akt signaling pathway, and the TGF-β signaling pathway. By consensus cluster analysis, patients with OC were split into two stemness subtypes, with subtype II having a better prognosis and higher immune infiltration. Furthermore, we identified 11 key genes to construct the prognostic signature for patients with OC. Among these genes, the expression levels of nine, including

Indexed as

Neoplastic Stem CellsOvarian NeoplasmsFemaleHumansLogistic ModelsPrognosisimmune infiltrationovarian cancerprognosticstemness index

Identifiers

PMID35741755
PMCPMC9222264
OpenAlexW4281969941

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.