Evidence map›Paper›PMID 35741303›Full record

ArticleDiagnostics (Basel, Switzerland)2022

MixPatch: A New Method for Training Histopathology Image Classifiers.

Youngjin Park, Mujin Kim, Murtaza Ashraf, Young Sin Ko, Mun Yong Yi

Open access · goldAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Youngjin ParkDepartment of Industrial & Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea.ORCID 0000-0002-0754-8103
Mujin KimDepartment of Industrial & Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea.
Murtaza AshrafDepartment of Industrial & Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea.
Young Sin KoPathology Center, Seegene Medical Foundation, Seoul 04805, Korea.ORCID 0000-0003-1319-4847
Mun Yong YiDepartment of Industrial & Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Korea.ORCID 0000-0003-1784-8983
Korea Advanced Institute of Science and Technology · KR

Funding

Seegene Medical Foundation G01180115
6 · The paper itself

Abstract

CNN-based image processing has been actively applied to histopathological analysis to detect and classify cancerous tumors automatically. However, CNN-based classifiers generally predict a label with overconfidence, which becomes a serious problem in the medical domain. The objective of this study is to propose a new training method, called MixPatch, designed to improve a CNN-based classifier by specifically addressing the prediction uncertainty problem and examine its effectiveness in improving diagnosis performance in the context of histopathological image analysis. MixPatch generates and uses a new sub-training dataset, which consists of mixed-patches and their predefined ground-truth labels, for every single mini-batch. Mixed-patches are generated using a small size of clean patches confirmed by pathologists while their ground-truth labels are defined using a proportion-based soft labeling method. Our results obtained using a large histopathological image dataset shows that the proposed method performs better and alleviates overconfidence more effectively than any other method examined in the study. More specifically, our model showed 97.06% accuracy, an increase of 1.6% to 12.18%, while achieving 0.76% of expected calibration error, a decrease of 0.6% to 6.3%, over the other models. By specifically considering the mixed-region variation characteristics of histopathology images, MixPatch augments the extant mixed image methods for medical image analysis in which prediction uncertainty is a crucial issue. The proposed method provides a new way to systematically alleviate the overconfidence problem of CNN-based classifiers and improve their prediction accuracy, contributing toward more calibrated and reliable histopathology image analysis.

Indexed as

confidence calibrationdeep learninghistopathology image analysisprediction uncertainty

Identifiers

PMID35741303
PMCPMC9221905
OpenAlexW4283080836

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.