Evidence map›Paper›PMID 35741208›Full record

ArticleDiagnostics (Basel, Switzerland)2022

Rapid SARS-CoV-2 Virus Enrichment and RNA Extraction for Efficient Diagnostic Screening of Pooled Nasopharyngeal or Saliva Samples for Dilutions Up to 1:100.

Jamila S Marshall, Rachelle Turiello, Larissa L Cunha, Ella V Frazier, Jeff Hickey, Jeff Chapman, Melinda D Poulter, Heather L Fehling, James P Landers

Open access · goldAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jamila S MarshallDepartment of Chemistry, University of Virginia, Charlottesville, VA 22904, USA.ORCID 0000-0003-2299-8388
Rachelle TurielloDepartment of Chemistry, University of Virginia, Charlottesville, VA 22904, USA.ORCID 0000-0001-5110-2304
Larissa L CunhaDepartment of Chemistry, University of Virginia, Charlottesville, VA 22904, USA.
Ella V FrazierDepartment of Chemistry, University of Virginia, Charlottesville, VA 22904, USA.
Jeff HickeyMicroGEM International PLC, Charlottesville, VA 22903, USA.
Jeff ChapmanMicroGEM International PLC, Charlottesville, VA 22903, USA.
Melinda D PoulterDepartment of Pathology, University of Virginia, Charlottesville, VA 22903, USA.
Heather L FehlingClinical Reference Laboratory, Lenexa, KS 66215, USA.
James P LandersDepartment of Chemistry, University of Virginia, Charlottesville, VA 22904, USA.
University of Virginia · USAmerican College of Clinical Pharmacy · US

Funding

RAPID ACCELERATION OF DIAGNOSTICS ( RADX) PROGRAM: TECH PROJECT #2322 MICROGEM (MICROLAB)75N92020C00015 · NHLBI · PI HELLYAR, STUART HELLYAR · 2021 to 2022
$34.2M
NHLBI NIH HHS 75N92020C00015NIH HHS 75N92020C00015
6 · The paper itself

Abstract

As COVID-19 transmission control measures are gradually being lifted, a sensitive and rapid diagnostic method for large-scale screening could prove essential for monitoring population infection rates. However, many rapid workflows for SARS-CoV-2 detection and diagnosis are not amenable to the analysis of large-volume samples. Previously, our group demonstrated a technique for SARS-CoV-2 nanoparticle-facilitated enrichment and enzymatic lysis from clinical samples in under 10 min. Here, this sample preparation strategy was applied to pooled samples originating from nasopharyngeal (NP) swabs eluted in viral transport medium (VTM) and saliva samples diluted up to 1:100. This preparation method was coupled with conventional RT-PCR on gold-standard instrumentation for proof-of-concept. Additionally, real-time PCR analysis was conducted using an in-house, ultra-rapid real-time microfluidic instrument paired with an experimentally optimized rapid protocol. Following pooling and extraction from clinical samples, average cycle threshold (C

Indexed as

COVID-19enzymatic extractionnanoparticlesnasopharyngeal (NP) swabsPolymerase Chain Reaction (PCR)salivasample poolingSARS-CoV-2

Identifiers

PMID35741208
PMCPMC9221879
OpenAlexW4281660963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.