Evidence map›Paper›PMID 35740540›Full record

ArticleCancers2022

The Machine-Learning-Mediated Interface of Microbiome and Genetic Risk Stratification in Neuroblastoma Reveals Molecular Pathways Related to Patient Survival.

Xin Li, Xiaoqi Wang, Ruihao Huang, Andres Stucky, Xuelian Chen, Lan Sun, Qin Wen, Yunjing Zeng, Hansel Fletcher, Charles Wang and 6 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Xin LiDepartment of Basic Science, School of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.
Xiaoqi WangMedical Center of Hematology, Xinqiao Hospital, State Key Laboratory of Trauma, Burn and Combined Injury, Army Medical University, Chongqing 400037, China.
Ruihao HuangMedical Center of Hematology, Xinqiao Hospital, State Key Laboratory of Trauma, Burn and Combined Injury, Army Medical University, Chongqing 400037, China.
Andres StuckyDepartment of Basic Science, School of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.
Xuelian ChenDepartment of Basic Science, School of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.
Lan SunDepartment of Oncology, Bishan Hospital of Chongqing Medical University, the People's Hospital of Bishan District, Chongqing 400037, China.ORCID 0000-0003-3643-6124
Qin WenMedical Center of Hematology, Xinqiao Hospital, State Key Laboratory of Trauma, Burn and Combined Injury, Army Medical University, Chongqing 400037, China.
Yunjing ZengMedical Center of Hematology, Xinqiao Hospital, State Key Laboratory of Trauma, Burn and Combined Injury, Army Medical University, Chongqing 400037, China.
Hansel FletcherDepartment of Basic Science, School of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.
Charles WangDepartment of Basic Science, School of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.ORCID 0000-0001-8861-2121
Yi XuDivisions of Hematology and Oncology and Regenerative Medicine, Department of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.
Huynh CaoDivisions of Hematology and Oncology and Regenerative Medicine, Department of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.
Fengzhu SunQuantitative and Computational Biology Department, University of Southern California, Los Angeles, CA 90089, USA.
Shengwen Calvin LiCHOC Children's Research Institute, Children's Hospital of Orange County (CHOC), 1201 La Veta Ave., Orange, CA 92868-3874, USA.ORCID 0000-0002-9699-9204
Xi ZhangMedical Center of Hematology, Xinqiao Hospital, State Key Laboratory of Trauma, Burn and Combined Injury, Army Medical University, Chongqing 400037, China.ORCID 0000-0002-8548-2832
Jiang F ZhongDepartment of Basic Science, School of Medicine, Loma Linda University, Loma Linda, CA 92350, USA.
Loma Linda University · USArmy Medical University · CNChildren's Hospital of Orange County · USPeople's Hospital of Bishan District · CNUniversity of Southern California · US

Funding

Supplement: Large scale single-cell gene rearrangement detection with a microfluidic deviceR01CA251848 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZHONG, JOHN · 2020 to 2025
$2.4M
Studies on the virulence regulation in PorphyromonasR01DE025852 · NIDCR · LOMA LINDA UNIVERSITY · PI FLETCHER, HANSEL M. · 2016 to 2020
$2.0M
Molecular Characteristics of Treatment-resistant High-risk NeuroblastomaR01CA197903 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZHONG, JOHN · 2016 to 2020
$1.9M
Mechanisms for the repair of oxidative stress-induced DNA damage in PorphyromonasR21DE030411 · NIDCR · LOMA LINDA UNIVERSITY · PI FLETCHER, HANSEL M. · 2021 to 2022
$435k
NCI NIH HHS R01 CA197903NCI NIH HHS R01 CA251848NIDCR NIH HHS R01 DE025852NIDCR NIH HHS R21 DE030411NIH HHS R01 CA197903NIH HHS R01 CA251848
6 · The paper itself

Abstract

Currently, most neuroblastoma patients are treated according to the Children's Oncology Group (COG) risk group assignment; however, neuroblastoma's heterogeneity renders only a few predictors for treatment response, resulting in excessive treatment. Here, we sought to couple COG risk classification with tumor intracellular microbiome, which is part of the molecular signature of a tumor. We determine that an intra-tumor microbial gene abundance score, namely M-score, separates the high COG-risk patients into two subpopulations (M

Indexed as

genetic risk stratificationmachine learningmicrobial-based cancer prognosismicrobial signatureneuroblastomaRNA-seq

Identifiers

PMID35740540
PMCPMC9220810
OpenAlexW4282049424

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.