Evidence map›Paper›PMID 35740113›Full record

ArticleAntibiotics (Basel, Switzerland)2022

Are Virulence and Antibiotic Resistance Genes Linked? A Comprehensive Analysis of Bacterial Chromosomes and Plasmids.

Helena Darmancier, Célia P F Domingues, João S Rebelo, Ana Amaro, Francisco Dionísio, Joël Pothier, Octávio Serra, Teresa Nogueira

Abstract read
In one paragraph

Article in Antibiotics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Health and Psychological Predictors of Antibiotic Use in Infancy and Fathers' Role.European journal of investigation in health, psychology and education · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Microbiology spectrum · 2024
    Article
  10. Interesting Cytokine Profile Caused by Clinical Strains ofInternational journal of microbiology · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Overview of Virulence and Antibiotic Resistance inAntibiotics (Basel, Switzerland) · 2023
    Review
  17. Review
  18. Pandrug-resistantFrontiers in cellular and infection microbiology · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Helena DarmancierBacteriology and Mycology Laboratory, INIAV-National Institute for Agrarian and Veterinary Research, 2780-157 Oeiras, Portugal.
Célia P F DominguesBacteriology and Mycology Laboratory, INIAV-National Institute for Agrarian and Veterinary Research, 2780-157 Oeiras, Portugal.ORCID 0000-0003-2970-010X
João S RebelocE3c-Center for Ecology, Evolution and Environmental Change & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal.ORCID 0000-0002-8662-7378
Ana AmaroBacteriology and Mycology Laboratory, INIAV-National Institute for Agrarian and Veterinary Research, 2780-157 Oeiras, Portugal.ORCID 0000-0002-5139-3268
Francisco DionísiocE3c-Center for Ecology, Evolution and Environmental Change & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal.ORCID 0000-0002-3653-1511
Joël PothierAtelier de Bioinformatique, ISYEB, UMR 7205 CNRS MNHN UPMC EPHE, Muséum National d'Histoire Naturelle, CP 50, 45 Rue Buffon, F-75005 Paris, France.ORCID 0000-0002-4021-6055
Octávio SerraINIAV-National Institute for Agrarian and Veterinary Research, Portuguese Plant Germoplasm Bank, 4700-859 Braga, Portugal.
Teresa NogueiraBacteriology and Mycology Laboratory, INIAV-National Institute for Agrarian and Veterinary Research, 2780-157 Oeiras, Portugal.ORCID 0000-0002-0059-5177

Funding

Fundação para a Ciência e Tecnologia PTDC/BIA-MIC/28824/2017Fundação para a Ciência e Tecnologia PTDC/CVT-CVT/28469/2017Fundação para a Ciência e Tecnologia SFRH/BD/04631/2021Fundação para a Ciência e Tecnologia UI/BD/153078/2022
6 · The paper itself

Abstract

Although pathogenic bacteria are the targets of antibiotics, these drugs also affect hundreds of commensal or mutualistic species. Moreover, the use of antibiotics is not only restricted to the treatment of infections but is also largely applied in agriculture and in prophylaxis. During this work, we tested the hypothesis that there is a correlation between the number and the genomic location of antibiotic resistance (AR) genes and virulence factor (VF) genes. We performed a comprehensive study of 16,632 reference bacterial genomes in which we identified and counted all orthologues of AR and VF genes in each of the locations: chromosomes, plasmids, or in both locations of the same genome. We found that, on a global scale, no correlation emerges. However, some categories of AR and VF genes co-occur preferentially, and in the mobilome, which supports the hypothesis that some bacterial pathogens are under selective pressure to be resistant to specific antibiotics, a fact that can jeopardize antimicrobial therapy for some human-threatening diseases.

Indexed as

antibiotic resistanceco-selectionevolutiongenomicsIntegrative and Conjugative Elementplasmidvirulence

Identifiers

PMID35740113
PMCPMC9220345

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.