Evidence map›Paper›PMID 35739429›Full record

ArticlePlant cell reports2022

Identification of essential element determining fruit-specific transcriptional activity in the tomato HISTIDINE DECARBOXYLASE A gene promoter.

Hyun Min Kim, Se Hee Park, Seo Young Park, Sang Hoon Ma, Ju Hui Do, Ah Young Kim, Mi Jin Jeon, Jae Sung Shim, Young Hee Joung

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Article in Plant cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Hyun Min KimSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Se Hee ParkSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Seo Young ParkSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Sang Hoon MaSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Ju Hui DoSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Ah Young KimSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Mi Jin JeonMicroorganism Resources Division, National Institute of Biological Resources, Incheon, 22689, Republic of Korea.
Jae Sung ShimSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea. jsshim@jnu.ac.kr.
Young Hee JoungSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea. yhjoung@jnu.ac.kr.ORCID http://orcid.org/0000-0002-7284-0952
Chonnam National University · KRNational Institute of Biological Resources · KR

Funding

Rural Development Administration PJ01487401Rural Development Administration PJ01654401
6 · The paper itself

Abstract

key messageIn SlHDC-A promoter, SlHDC-A core-ES is an essential region for fruit-specific expression and interacts with GATA, HSF and AP1. Triplication of essential region was proposed as a minimal fruit-specific promoter. In plant biotechnology, fruit-specific promoter is an important tool for the improvement and utilization of tomato fruit. To expand our understanding on fruit-specific expression, it is necessary to determine the promoter region involved in fruit-specific transcriptional activity and transcriptional regulations of the promoter. In previous study, we isolated a fruit-specific SlHDC-A core promoter specifically expressed during tomato ripening stages. In this study, we identified SlHDC-A promoter region (SlHDC-A core-ES) that is essential for fruit-specific expression of the SlHDC-A. To understand the molecular mechanisms of fruit-specific expression of the SlHDC-A promoter, we first identified the putative transcription factor binding elements in the SlHDC-A core promoter region and corresponding putative transcription factors which are highly expressed during fruit maturation. Yeast one hybrid analysis confirmed that GATA, HSF, and AP1 interact with the SlHDC-A core-ES promoter region. Further transactivation analysis revealed that expression of the three transcription factors significantly activated expression of a reporter gene driven by SlHDC-A core-ES promoter. These results suggest that GATA, HSF, and AP1 are involved in the fruit-specific expression of SlHDC-A promoter. Furthermore, the synthetic promoter composed of three tandem repeats of SlHDC-A core-ES showed relatively higher activity than the constitutive 35S promoter in the transgenic tomato fruits at the orange stage. Taken together, we propose a new synthetic promoter that is specifically expressed during fruit ripening stage.

Indexed as

Solanum lycopersicumFruitGene Expression Regulation, PlantHistidine DecarboxylasePlant ProteinsPromoter Regions, GeneticTranscription FactorsHistidine DecarboxylasePlant ProteinsTranscription FactorsCis-regulatory moduleFruit ripeningFruit-specific promoterTomato fruitTranscription factor

Identifiers

PMID35739429
OpenAlexW4283312205

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.