Evidence map›Paper›PMID 35736865›Full record

ArticleTomography (Ann Arbor, Mich.)2022

Web-Based Application for Biomedical Image Registry, Analysis, and Translation (BiRAT).

Rahul Pemmaraju, Robert Minahan, Elise Wang, Kornel Schadl, Heike Daldrup-Link, Frezghi Habte

Abstract read
In one paragraph

Article in Tomography (Ann Arbor, Mich.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. The Next Frontier in Quantitative Co-Clinical Imaging to Advance Functional Precision Oncology.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rahul PemmarajuSchool of Bioengineering and Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Robert MinahanComputational and Systems Biology, University of California-Los Angeles, Los Angeles, CA 90095, USA.
Elise WangSchool of Medicine, University of Rochester, Rochester, NY 14642, USA.
Kornel SchadlDepartment of Orthopedic Surgery, Stanford School of Medicine, Stanford, CA 94305, USA.
Heike Daldrup-LinkDepartment of Radiology, Stanford School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0002-4929-819X
Frezghi HabteDepartment of Radiology, Stanford School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0002-9488-3427

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Vittorio Sebastiano · 2007 to 2026
$71.4M
Co-Clinical Research Resource for Imaging Tumor Associated MacrophagesU24CA264298 · NCI · STANFORD UNIVERSITY · PI DALDRUP-LINK, HEIKE ELIZABETH, GATIDIS, SERGIOS · 2021 to 2025
$3.2M
CANARY CANCER RESEARCH EDUCATION SUMMER TRAINING (CANARY CREST) PROGRAMR25CA217729 · NCI · STANFORD UNIVERSITY · PI Utkan DEMIRCI, Sharon Pitteri · 2017 to 2026
$2.5M
NCI NIH HHS P30 CA124435NCI NIH HHS R25 CA217729NCI NIH HHS U24 CA264298
6 · The paper itself

Abstract

Imaging has become an invaluable tool in preclinical research for its capability to non-invasively detect and monitor disease and assess treatment response. With the increased use of preclinical imaging, large volumes of image data are being generated requiring critical data management tools. Due to proprietary issues and continuous technology development, preclinical images, unlike DICOM-based images, are often stored in an unstructured data file in company-specific proprietary formats. This limits the available DICOM-based image management database to be effectively used for preclinical applications. A centralized image registry and management tool is essential for advances in preclinical imaging research. Specifically, such tools may have a high impact in generating large image datasets for the evolving artificial intelligence applications and performing retrospective analyses of previously acquired images. In this study, a web-based server application is developed to address some of these issues. The application is designed to reflect the actual experimentation workflow maintaining detailed records of both individual images and experimental data relevant to specific studies and/or projects. The application also includes a web-based 3D/4D image viewer to easily and quickly view and evaluate images. This paper briefly describes the initial implementation of the web-based application.

Indexed as

Radiology Information SystemsArtificial IntelligenceInternetRegistriesRetrospective Studiesbiomedical imagingcancer imagingimage data managementimage data scienceimage data storagemedical imagingmultimodality imagingPACspreclinical imaging

Identifiers

PMID35736865
PMCPMC9228304

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.