Evidence map›Paper›PMID 35736798›Full record

ArticleJMIR research protocols2022

The Roles of a Secondary Data Analytics Tool and Experience in Scientific Hypothesis Generation in Clinical Research: Protocol for a Mixed Methods Study.

Xia Jing, Vimla L Patel, James J Cimino, Jay H Shubrook, Yuchun Zhou, Chang Liu, Sonsoles De Lacalle

Abstract read
In one paragraph

Article in JMIR research protocols, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xia JingDepartment of Public Health Sciences, College of Behavioral, Social, and Health Sciences, Clemson University, Clemson, SC, United States.ORCID https://orcid.org/0000-0002-1916-4588
Vimla L PatelCognitive Studies in Medicine and Public Health, The New York Academy of Medicine, New York City, NY, United States.ORCID https://orcid.org/0000-0003-1656-6642
James J CiminoInformatics Institute, School of Medicine, University of Alabama, Birmingham, Birmingham, AL, United States.ORCID https://orcid.org/0000-0003-4101-1622
Jay H ShubrookCollege of Osteopathic Medicine, Touro University, Vallejo, CA, United States.ORCID https://orcid.org/0000-0001-5173-2656
Yuchun ZhouPatton College of Education, Ohio University, Athens, OH, United States.ORCID https://orcid.org/0000-0002-0925-5507
Chang LiuRuss College of Engineering and Technology, Ohio University, Athens, OH, United States.ORCID https://orcid.org/0000-0002-6721-1959
Sonsoles De LacalleCollege of Art and Science, California State University Channel Islands, Camarillo, CA, United States.ORCID https://orcid.org/0000-0001-9594-698X

Funding

Tissue Structural and Neural Remodeling in Human Sacroiliac JointP20GM121342 · NIGMS · CLEMSON UNIVERSITY · PI Peng Chen · 2018 to 2026
$24.7M
Exploration of the hypothesis-generation process as guided by secondary data analysis in clinical research: Can the process be more efficient?R15LM012941 · NLM · OHIO UNIVERSITY ATHENS · PI JING, XIA · 2018 to 2018
$394k
NIGMS NIH HHS P20 GM121342NLM NIH HHS R15 LM012941
6 · The paper itself

Abstract

backgroundScientific hypothesis generation is a critical step in scientific research that determines the direction and impact of any investigation. Despite its vital role, we have limited knowledge of the process itself, thus hindering our ability to address some critical questions.

objectiveThis study aims to answer the following questions: To what extent can secondary data analytics tools facilitate the generation of scientific hypotheses during clinical research? Are the processes similar in developing clinical diagnoses during clinical practice and developing scientific hypotheses for clinical research projects? Furthermore, this study explores the process of scientific hypothesis generation in the context of clinical research. It was designed to compare the role of VIADS, a visual interactive analysis tool for filtering and summarizing large data sets coded with hierarchical terminologies, and the experience levels of study participants during the scientific hypothesis generation process.

methodsThis manuscript introduces a study design. Experienced and inexperienced clinical researchers are being recruited since July 2021 to take part in this 2×2 factorial study, in which all participants use the same data sets during scientific hypothesis-generation sessions and follow predetermined scripts. The clinical researchers are separated into experienced or inexperienced groups based on predetermined criteria and are then randomly assigned into groups that use and do not use VIADS via block randomization. The study sessions, screen activities, and audio recordings of participants are captured. Participants use the think-aloud protocol during the study sessions. After each study session, every participant is given a follow-up survey, with participants using VIADS completing an additional modified System Usability Scale survey. A panel of clinical research experts will assess the scientific hypotheses generated by participants based on predeveloped metrics. All data will be anonymized, transcribed, aggregated, and analyzed.

resultsData collection for this study began in July 2021. Recruitment uses a brief online survey. The preliminary results showed that study participants can generate a few to over a dozen scientific hypotheses during a 2-hour study session, regardless of whether they used VIADS or other analytics tools. A metric to more accurately, comprehensively, and consistently assess scientific hypotheses within a clinical research context has been developed.

conclusionsThe scientific hypothesis-generation process is an advanced cognitive activity and a complex process. Our results so far show that clinical researchers can quickly generate initial scientific hypotheses based on data sets and prior experience. However, refining these scientific hypotheses is a much more time-consuming activity. To uncover the fundamental mechanisms underlying the generation of scientific hypotheses, we need breakthroughs that can capture thinking processes more precisely. INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID): DERR1-10.2196/39414.

Indexed as

clinical researchobservational studyscientific hypothesis generationsecondary data analytics toolthink-aloud method

Identifiers

PMID35736798
PMCPMC9345027

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.