Evidence map›Paper›PMID 35736356›Full record

ArticleG3 (Bethesda, Md.)2022

Genomics analysis of Drosophila sechellia response to Morinda citrifolia fruit diet.

Zachary Drum, Stephen Lanno, Sara M Gregory, Serena Shimshak, Will Barr, Austin Gatesman, Mark Schadt, Jack Sanford, Aaron Arkin, Brynn Assignon and 18 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Environmental Regulation and Gene-by-Environment Interaction InfluencebioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 1 institution in 1 country.

Zachary DrumDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.ORCID 0000-0003-4261-5639
Stephen LannoDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Sara M GregoryDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Serena ShimshakDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Will BarrDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.ORCID 0000-0001-6723-7684
Austin GatesmanDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Mark SchadtDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Jack SanfordDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Aaron ArkinDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Brynn AssignonDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Sofia ColoradoDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Carol DalgarnoDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Trevor DevannyDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Tara GhandourDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Rose GriffinDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Mia HoganDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Erica HorowitzDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Emily McGhieDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Jake MulterDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Hannah O'HalloranDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Kofi Ofori-DarkoDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Dmitry PokushalovDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Nick RichardsDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Kathleen SagarinDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Nicholas TaylorDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Acadia ThielkingDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Phie TowleDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.
Joseph CoolonDepartment of Biology, Wesleyan University, Middletown, CT 06457, USA.ORCID 0000-0003-1591-9418
Wesleyan University · US

Funding

Computational Bioscience Program Training GrantT15LM009451 · NLM · UNIVERSITY OF COLORADO DENVER · PI Katherina Kechris-Mays, Arjun Krishnan · 2007 to 2026
$11.7M
Information flow through regulatory networksR15GM135901 · NIGMS · WESLEYAN UNIVERSITY · PI COOLON, JOSEPH DAVID · 2019 to 2019
$493k
NIGMS NIH HHS R15 GM135901NLM NIH HHS T15 LM009451
6 · The paper itself

Abstract

Drosophila sechellia is an island endemic host specialist that has evolved to consume the toxic fruit of Morinda citrifolia, also known as noni fruit. Recent studies by our group and others have examined genome-wide gene expression responses of fruit flies to individual highly abundant compounds found in noni responsible for the fruit's unique chemistry and toxicity. In order to relate these reductionist experiments to the gene expression responses to feeding on noni fruit itself, we fed rotten noni fruit to adult female D. sechellia and performed RNA-sequencing. Combining the reductionist and more wholistic approaches, we have identified candidate genes that may contribute to each individual compound and those that play a more general role in response to the fruit as a whole. Using the compound specific and general responses, we used transcription factor prediction analyses to identify the regulatory networks and specific regulators involved in the responses to each compound and the fruit itself. The identified genes and regulators represent the possible genetic mechanisms and biochemical pathways that contribute to toxin resistance and noni specialization in D. sechellia.

Indexed as

DrosophilaMorindaAnimalsDietFemaleGenomicsRNATranscription FactorsRNATranscription Factorshost specializationMorinda citrifolianoniRNA-seqtoxin resistance

Identifiers

PMID35736356
PMCPMC9526069
OpenAlexW4283378774

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.