Evidence map›Paper›PMID 35733088›Full record

ArticleBMC genomics2022

Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks.

Claude Rispe, Caroline Hervet, Nathalie de la Cotte, Romain Daveu, Karine Labadie, Benjamin Noel, Jean-Marc Aury, Steeve Thany, Emiliane Taillebois, Alison Cartereau and 6 more

Erratum issuedOpen access · goldAbstract readCase Reports
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Claude RispeINRAE, Oniris, BIOEPAR, Nantes, France. claude.rispe@inrae.fr.
Caroline HervetINRAE, Oniris, BIOEPAR, Nantes, France.
Nathalie de la CotteINRAE, Oniris, BIOEPAR, Nantes, France.
Romain DaveuINRAE, Oniris, BIOEPAR, Nantes, France.
Karine LabadieGénomique Métabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Université d'Evry, Université Paris-Saclay, Evry, France.
Benjamin NoelGénomique Métabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Université d'Evry, Université Paris-Saclay, Evry, France.
Jean-Marc AuryGénomique Métabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Université d'Evry, Université Paris-Saclay, Evry, France.
Steeve ThanyUniversité d'Orléans, LBLGC USC INRAE 1328, 1 rue de Chartres, 45067, Orléans, France.
Emiliane TailleboisUniversité d'Orléans, LBLGC USC INRAE 1328, 1 rue de Chartres, 45067, Orléans, France.
Alison CartereauUniversité d'Orléans, LBLGC USC INRAE 1328, 1 rue de Chartres, 45067, Orléans, France.
Anaïs Le MauffUniversité d'Orléans, LBLGC USC INRAE 1328, 1 rue de Chartres, 45067, Orléans, France.
Claude L CharvetINRAE, ISP, 37380, Nouzilly, France.
Clément AugerINRAE, ISP, 37380, Nouzilly, France.
Elise CourtotINRAE, ISP, 37380, Nouzilly, France.
Cédric NeveuINRAE, ISP, 37380, Nouzilly, France.
Olivier PlantardINRAE, Oniris, BIOEPAR, Nantes, France.
Biologie Epidémiologie et Analyse de Risque en santé animaleInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRPhysiologie, Ecologie et Environnement · FRCEA Paris-Saclay · FRGenoscope · FRLaboratoire de Génie des Procédés – Environnement – Agro-alimentaire · FR

Funding

France Génomique ANR-10-INBS-09-08Institut Carnot France Futur Elevage Xenobiotick project
6 · The paper itself

Abstract

backgroundTicks represent a major health issue for humans and domesticated animals. Exploring the expression landscape of the tick's central nervous system (CNS), known as the synganglion, would be an important step in understanding tick physiology and in managing tick-borne diseases, but studies on that topic are still relatively scarce. Neuron-specific genes like the cys-loop ligand-gated ion channels (cys-loop LGICs, or cysLGICs) are important pharmacological targets of acaricides. To date their sequence have not been well catalogued for ticks, and their phylogeny has not been fully studied.

resultsWe carried out the sequencing of transcriptomes of the I. ricinus synganglion, for adult ticks in different conditions (unfed males, unfed females, and partially-fed females). The de novo assembly of these transcriptomes allowed us to obtain a large collection of cys-loop LGICs sequences. A reference meta-transcriptome based on synganglion and whole body transcriptomes was then produced, showing high completeness and allowing differential expression analyses between synganglion and whole body. Many of the genes upregulated in the synganglion were associated with neurotransmission and/or localized in neurons or the synaptic membrane. As the first step of a functional study of cysLGICs, we cloned the predicted sequence of the resistance to dieldrin (RDL) subunit homolog, and functionally reconstituted the first GABA-gated receptor of Ixodes ricinus. A phylogenetic study was performed for the nicotinic acetylcholine receptors (nAChRs) and other cys-loop LGICs respectively, revealing tick-specific expansions of some types of receptors (especially for Histamine-like subunits and GluCls).

conclusionsWe established a large catalogue of genes preferentially expressed in the tick CNS, including the cysLGICs. We discovered tick-specific gene family expansion of some types of cysLGIC receptors, and a case of intragenic duplication, suggesting a complex pattern of gene expression among different copies or different alternative transcripts of tick neuro-receptors.

Indexed as

IxodesLigand-Gated Ion ChannelsReceptors, NicotinicAnimalsFemaleMalePhylogenyTranscriptomeLigand-Gated Ion ChannelsReceptors, NicotinicCys-loop receptorsDifferential expressionDuplicationSynganglionTick

Identifiers

PMID35733088
PMCPMC9219234
OpenAlexW4283323648

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.