Evidence map›Paper›PMID 35729174›Full record

ArticleNature communications2022

Cyclic microchip assay for measurement of hundreds of functional proteins in single neurons.

Liwei Yang, Avery Ball, Jesse Liu, Tanya Jain, Yue-Ming Li, Firoz Akhter, Donghui Zhu, Jun Wang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Liwei YangMultiplex Biotechnology Laboratory, Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA.ORCID 0000-0001-7834-0249
Avery BallMultiplex Biotechnology Laboratory, Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA.
Jesse LiuMultiplex Biotechnology Laboratory, Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA.
Tanya JainChemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Yue-Ming LiChemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-2633-3730
Firoz AkhterDepartment of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA.
Donghui ZhuDepartment of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA.ORCID 0000-0002-3057-1889
Jun WangMultiplex Biotechnology Laboratory, Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA. Jun.wang.5@stonybrook.edu.ORCID 0000-0002-3097-1006
Stony Brook University · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Regulation of y-secretase activity by modulatory proteinsR01AG061350 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI LI, YUEMING · 2019 to 2023
$4.3M
Molecular Mechanism and Functional Role of Magnesium in Neuroinflammation in Alzheimer's DiseaseR01AG064798 · NIA · STATE UNIVERSITY NEW YORK STONY BROOK · PI ZHU, DONGHUI · 2019 to 2023
$3.6M
Substrate Feedback Mechanism of gamma-SecretaseRF1AG057593 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI LI, YUEMING · 2018 to 2018
$2.1M
Mechanism and Synergy of gamma-Secretase ModulatorsR01NS096275 · NINDS · SLOAN-KETTERING INST CAN RESEARCH · PI LI, YUEMING · 2016 to 2020
$2.1M
Development of Single-Cell Multiplex in Situ Tagging Microtechnology for Comprehensive Profiling of Functionally Diverse Subpopulations and Their Signaling PathwaysR01GM128984 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI WANG, JUN · 2018 to 2021
$1.3M
Single-Cell Functional Proteomics Study of Neurodegeneration in Alzheimer's DiseaseR21AG072076 · NIA · STATE UNIVERSITY NEW YORK STONY BROOK · PI WANG, JUN · 2021 to 2021
$439k
NCI NIH HHS P30 CA008748NIA NIH HHS R01 AG061350NIA NIH HHS R01 AG064798NIA NIH HHS R21 AG072076NIA NIH HHS RF1 AG057593NIGMS NIH HHS R01 GM128984NINDS NIH HHS R01 NS096275
6 · The paper itself

Abstract

Despite the fact that proteins carry out nearly all cellular functions and mark the differences of cells, the existing single-cell tools can only analyze dozens of proteins, a scale far from full characterization of cells and tissue yet. Herein, we present a single-cell cyclic multiplex in situ tagging (CycMIST) technology that affords the comprehensive functional proteome profiling of single cells. We demonstrate the technology by detecting 182 proteins that include surface markers, neuron function proteins, neurodegeneration markers, signaling pathway proteins, and transcription factors. Further studies on cells derived from the 5XFAD mice, an Alzheimer's Disease (AD) model, validate the utility of our technology and reveal the deep heterogeneity of brain cells. Through comparison with control mouse cells, we have identified differentially expressed proteins in AD pathology. Our technology could offer new insights into cell machinery and thus may advance many fields including drug discovery, molecular diagnostics, and clinical studies.

Indexed as

Alzheimer DiseaseAnimalsBiomarkersBrainDisease Models, AnimalMiceMice, TransgenicNeuronsBiomarkers

Identifiers

PMID35729174
PMCPMC9213506
OpenAlexW4283205985

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.