Evidence map›Paper›PMID 35728967›Full record

ArticleGenome research2022

Somatic retrotransposition in the developing rhesus macaque brain.

Victor Billon, Francisco J Sanchez-Luque, Jay Rasmussen, Gabriela O Bodea, Daniel J Gerhardt, Patricia Gerdes, Seth W Cheetham, Stephanie N Schauer, Prabha Ajjikuttira, Thomas J Meyer and 8 more

Open access · greenAbstract read
In one paragraph

Article in Genome research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Impact of the 294 bp SINE Insertion in 5'UTR of theAnimals : an open access journal from MDPI · 2025
    Article
  5. From the genome's perspective: Bearing somatic retrotransposition to leverage the regulatory potential of L1 RNAs.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Insertion of 643bp Retrotransposon Upstream ofAnimals : an open access journal from MDPI · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 5 countries.

Victor Billon *Queensland Brain Institute, University of Queensland, St. Lucia, Queensland 4067, Australia.
Francisco J Sanchez-Luque *GENYO. Pfizer-University of Granada-Andalusian Government Centre for Genomics and Oncological Research, PTS Granada 18016, Spain.
Jay Rasmussen *Queensland Brain Institute, University of Queensland, St. Lucia, Queensland 4067, Australia.
Gabriela O Bodea *Queensland Brain Institute, University of Queensland, St. Lucia, Queensland 4067, Australia.
Daniel J GerhardtMater Research Institute-University of Queensland, Woolloongabba, Queensland 4102, Australia.
Patricia GerdesMater Research Institute-University of Queensland, Woolloongabba, Queensland 4102, Australia.
Seth W CheethamMater Research Institute-University of Queensland, Woolloongabba, Queensland 4102, Australia.ORCID http://orcid.org/0000-0001-6428-3175
Stephanie N SchauerMater Research Institute-University of Queensland, Woolloongabba, Queensland 4102, Australia.
Prabha AjjikuttiraQueensland Brain Institute, University of Queensland, St. Lucia, Queensland 4067, Australia.
Thomas J MeyerDivision of Genetics, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.
Cora E LaymanDepartment of Medicine, Knight Cardiovascular Institute, Oregon Health and Science University, Portland, Oregon 97239, USA.
Kimberly A NevonenDepartment of Medicine, Knight Cardiovascular Institute, Oregon Health and Science University, Portland, Oregon 97239, USA.
Natasha JanszMater Research Institute-University of Queensland, Woolloongabba, Queensland 4102, Australia.
Jose L Garcia-PerezGENYO. Pfizer-University of Granada-Andalusian Government Centre for Genomics and Oncological Research, PTS Granada 18016, Spain.
Sandra R RichardsonMater Research Institute-University of Queensland, Woolloongabba, Queensland 4102, Australia.
Adam D EwingMater Research Institute-University of Queensland, Woolloongabba, Queensland 4102, Australia.
Lucia CarboneDivision of Genetics, Oregon National Primate Research Center, Beaverton, Oregon 97006, USA.
Geoffrey J FaulknerQueensland Brain Institute, University of Queensland, St. Lucia, Queensland 4067, Australia.ORCID http://orcid.org/0000-0001-5769-4494
The University of Queensland · AUOregon Health & Science University · USOregon National Primate Research Center · USWestern General Hospital · GBÉcole Normale Supérieure Paris-Saclay · FR

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Monkey Alcohol Tissue Research Resource (MATRR)R24AA019431 · NIAAA · OREGON HEALTH & SCIENCE UNIVERSITY · PI Mary Lauren Benton, Verginia Carmella Cuzon Carlson · 2010 to 2026
$10.3M
NIAAA NIH HHS R24 AA019431NIH HHS P51 OD011092
6 · The paper itself

Abstract

The retrotransposon LINE-1 (L1) is central to the recent evolutionary history of the human genome and continues to drive genetic diversity and germline pathogenesis. However, the spatiotemporal extent and biological significance of somatic L1 activity are poorly defined and are virtually unexplored in other primates. From a single L1 lineage active at the divergence of apes and Old World monkeys, successive L1 subfamilies have emerged in each descendant primate germline. As revealed by case studies, the presently active human L1 subfamily can also mobilize during embryonic and brain development in vivo. It is unknown whether nonhuman primate L1s can similarly generate somatic insertions in the brain. Here we applied approximately 40× single-cell whole-genome sequencing (scWGS), as well as retrotransposon capture sequencing (RC-seq), to 20 hippocampal neurons from two rhesus macaques (

Indexed as

BrainLong Interspersed Nucleotide ElementsRetroelementsAnimalsDNA-Binding ProteinsMacaca mulattaNeuronsTranscription FactorsDNA-Binding ProteinsRetroelementsTranscription Factors

Identifiers

PMID35728967
PMCPMC9341517
OpenAlexW4283270434

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.