Evidence map›Paper›PMID 35728000›Full record

ArticleEuropean heart journal2022

Serine biosynthesis as a novel therapeutic target for dilated cardiomyopathy.

Isaac Perea-Gil, Timon Seeger, Arne A N Bruyneel, Vittavat Termglinchan, Emma Monte, Esther W Lim, Nirmal Vadgama, Takaaki Furihata, Alexandra A Gavidia, Jennifer Arthur Ataam and 12 more

Open access · greenAbstract read
In one paragraph

Article in European heart journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 67 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Isaac Perea-GilDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.ORCID 0000-0002-9741-428X
Timon SeegerDepartment of Medicine III, University Hospital Heidelberg, Heidelberg, Germany.
Arne A N BruyneelCardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-1076-4381
Vittavat TermglinchanDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.ORCID 0000-0002-6559-0668
Emma MonteDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-2566-1967
Esther W LimDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Nirmal VadgamaDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.ORCID 0000-0001-6226-3867
Takaaki FurihataDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-0473-5958
Alexandra A GavidiaDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.ORCID 0000-0002-9347-4664
Jennifer Arthur AtaamDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.
Nike BharuchaDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.
Noel Martinez-AmadorDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.ORCID 0000-0002-5787-7183
Mohamed AmeenCardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA.
Pooja NairDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.ORCID 0000-0001-5942-966X
Ricardo SerranoCardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-4206-3638
Balpreet KaurDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.
Dries A M FeyenCardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA.
Sebastian DieckeMax-Delbrueck-Center for Molecular Medicine, Berlin, Germany.
Michael P SnyderDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-0784-7987
Christian M MetalloDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Mark MercolaCardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0002-1430-2013
Ioannis KarakikesDepartment of Cardiothoracic Surgery, Stanford University School of Medicine, 240 Pasteur Dr, Stanford, CA 94304, USA.ORCID 0000-0002-4348-600X
Cardiovascular Institute of the South · USStanford University · USSalk Institute for Biological Studies · USHeidelberg University · DEMax Delbrück Center · DE

Funding

Project 3 (Mercola)P01HL141084 · NHLBI · STANFORD UNIVERSITY · PI Joseph C. Wu · 2019 to 2026
$21.1M
Biorepository of Human iPSCs for Studying Dilated and Hypertrophic CardiomyopathyR24HL117756 · NHLBI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, SNYDER, MICHAEL P. · 2014 to 2018
$8.8M
Training in Multi-Scale Analysis of Biological Structure and FunctionT32EB009380 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrew D. McCulloch, Padmini Rangamani · 2009 to 2026
$4.8M
MicroRNA Control of Dilated CardiomyopathyR01HL130840 · NHLBI · STANFORD UNIVERSITY · PI MARK MERCOLA, Shankar Subramaniam · 2016 to 2026
$4.6M
Unraveling the pathogenesis of familial dilated cardiomyopathy towards precision medicineR01HL139679 · NHLBI · STANFORD UNIVERSITY · PI Ioannis Karakikes · 2018 to 2026
$4.2M
Targeting the genotype to phenotype link in HCM as a therapeutic strategyR01HL152055 · NHLBI · STANFORD UNIVERSITY · PI MERCOLA, MARK · 2021 to 2024
$2.3M
The Role of 3-Dimensional Genome Integrity In Cardiac LaminopathiesR01HL150414 · NHLBI · STANFORD UNIVERSITY · PI KARAKIKES, IOANNIS · 2020 to 2023
$2.1M
Small Molecule NOTCH Inhibitors for the treatment of pulmonary hypertensionR01HL132225 · NHLBI · STANFORD UNIVERSITY · PI MERCOLA, MARK, THISTLETHWAITE, PATRICIA A · 2016 to 2019
$1.7M
miR-152: A Novel Regulator of Diabetic CardiomyopathyR00HL104002 · NHLBI · STANFORD UNIVERSITY · PI KARAKIKES, IOANNIS · 2017 to 2019
$893k
Kinetic Imaging Cytometer (KIC) for High Throughput Studies of Cellular PhysiologyS10OD030264 · OD · STANFORD UNIVERSITY · PI MERCOLA, MARK · 2021 to 2021
$528k
NHLBI NIH HHS P01 HL141084NHLBI NIH HHS R00 HL104002NHLBI NIH HHS R01 HL130840NHLBI NIH HHS R01 HL132225NHLBI NIH HHS R01 HL139679NHLBI NIH HHS R01 HL150414NHLBI NIH HHS R01 HL152055NHLBI NIH HHS R24 HL117756NIH HHS S10 OD030264
6 · The paper itself

Abstract

aimsGenetic dilated cardiomyopathy (DCM) is a leading cause of heart failure. Despite significant progress in understanding the genetic aetiologies of DCM, the molecular mechanisms underlying the pathogenesis of familial DCM remain unknown, translating to a lack of disease-specific therapies. The discovery of novel targets for the treatment of DCM was sought using phenotypic sceening assays in induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) that recapitulate the disease phenotypes in vitro. METHODS AND

resultsUsing patient-specific iPSCs carrying a pathogenic TNNT2 gene mutation (p.R183W) and CRISPR-based genome editing, a faithful DCM model in vitro was developed. An unbiased phenotypic screening in TNNT2 mutant iPSC-derived cardiomyocytes (iPSC-CMs) with small molecule kinase inhibitors (SMKIs) was performed to identify novel therapeutic targets. Two SMKIs, Gö 6976 and SB 203580, were discovered whose combinatorial treatment rescued contractile dysfunction in DCM iPSC-CMs carrying gene mutations of various ontologies (TNNT2, TTN, LMNA, PLN, TPM1, LAMA2). The combinatorial SMKI treatment upregulated the expression of genes that encode serine, glycine, and one-carbon metabolism enzymes and significantly increased the intracellular levels of glucose-derived serine and glycine in DCM iPSC-CMs. Furthermore, the treatment rescued the mitochondrial respiration defects and increased the levels of the tricarboxylic acid cycle metabolites and ATP in DCM iPSC-CMs. Finally, the rescue of the DCM phenotypes was mediated by the activating transcription factor 4 (ATF4) and its downstream effector genes, phosphoglycerate dehydrogenase (PHGDH), which encodes a critical enzyme of the serine biosynthesis pathway, and Tribbles 3 (TRIB3), a pseudokinase with pleiotropic cellular functions.

conclusionsA phenotypic screening platform using DCM iPSC-CMs was established for therapeutic target discovery. A combination of SMKIs ameliorated contractile and metabolic dysfunction in DCM iPSC-CMs mediated via the ATF4-dependent serine biosynthesis pathway. Together, these findings suggest that modulation of serine biosynthesis signalling may represent a novel genotype-agnostic therapeutic strategy for genetic DCM.

Indexed as

Cardiomyopathy, DilatedMolecular Targeted TherapyMyocytes, CardiacProtein Kinase InhibitorsSerineTroponin TActivating Transcription Factor 4Adenosine TriphosphateAnti-Inflammatory Agents, Non-SteroidalCarbazolesDrug Evaluation, PreclinicalGlucoseGlycineHumansImidazolesInduced Pluripotent Stem CellsActivating Transcription Factor 4Adenosine TriphosphateAnti-Inflammatory Agents, Non-SteroidalCarbazolesGlucoseGlycineGo 6976ImidazolesPhosphoglycerate DehydrogenaseProtein Kinase InhibitorsPyridinesSB 203580SerineTNNT2 protein, humanTroponin TCardiomyocytesClinical-trial-in-a-dishDilated cardiomyopathyDrug screeningInduced pluripotent stem cellsPhenotypic screensPrecision medicine

Identifiers

PMID35728000
PMCPMC9794189
OpenAlexW4283264522

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.