Evidence map›Paper›PMID 35727850›Full record

ArticlePLoS computational biology2022

Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance.

Mikahl Banwarth-Kuhn, Kevin Rodriguez, Christian Michael, Calvin-Khang Ta, Alexander Plong, Eric Bourgain-Chang, Ali Nematbakhsh, Weitao Chen, Amit Roy-Chowdhury, G Venugopala Reddy and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Stem Cells: Engines of Plant Growth and Development.International journal of molecular sciences · 2023
    Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Mikahl Banwarth-KuhnInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.ORCID 0000-0002-4696-9453
Kevin RodriguezInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.ORCID 0000-0002-5229-4106
Christian MichaelInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.ORCID 0000-0003-3583-6097
Calvin-Khang TaComputer Science and Engineering Department, University of California, Riverside, California, United States of America.ORCID 0000-0001-7191-7981
Alexander PlongInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.
Eric Bourgain-ChangInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.
Ali NematbakhshInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.ORCID 0000-0001-7411-6039
Weitao ChenInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.
Amit Roy-ChowdhuryComputer Science and Engineering Department, University of California, Riverside, California, United States of America.
G Venugopala ReddyInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.
Mark AlberInterdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.ORCID 0000-0002-7153-1138
University of California, Riverside · US

Funding

Multiscale Models of Wound Cell Plasticity for RegenerationU01AR073159 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI DAI, XING, NIE, QING · 2018 to 2022
$3.5M
Mentor Training to enhance mentorship in an interdisciplinary training programT32GM136624 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Arthur D Lander, Qing Nie · 2020 to 2026
$3.1M
NIAMS NIH HHS U01 AR073159NIGMS NIH HHS T32 GM136624
6 · The paper itself

Abstract

Stem cell maintenance in multilayered shoot apical meristems (SAMs) of plants requires strict regulation of cell growth and division. Exactly how the complex milieu of chemical and mechanical signals interact in the central region of the SAM to regulate cell division plane orientation is not well understood. In this paper, simulations using a newly developed multiscale computational model are combined with experimental studies to suggest and test three hypothesized mechanisms for the regulation of cell division plane orientation and the direction of anisotropic cell expansion in the corpus. Simulations predict that in the Apical corpus, WUSCHEL and cytokinin regulate the direction of anisotropic cell expansion, and cells divide according to tensile stress on the cell wall. In the Basal corpus, model simulations suggest dual roles for WUSCHEL and cytokinin in regulating both the direction of anisotropic cell expansion and cell division plane orientation. Simulation results are followed by a detailed analysis of changes in cell characteristics upon manipulation of WUSCHEL and cytokinin in experiments that support model predictions. Moreover, simulations predict that this layer-specific mechanism maintains both the experimentally observed shape and structure of the SAM as well as the distribution of WUSCHEL in the tissue. This provides an additional link between the roles of WUSCHEL, cytokinin, and mechanical stress in regulating SAM growth and proper stem cell maintenance in the SAM.

Indexed as

ArabidopsisArabidopsis ProteinsCell WallComputer SimulationCytokininsGene Expression Regulation, PlantHomeodomain ProteinsMeristemPlant ShootsArabidopsis ProteinsCytokininsHomeodomain Proteins

Identifiers

PMID35727850
PMCPMC9249181
OpenAlexW4283260445

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.