Evidence map›Paper›PMID 35727847›Full record

ArticlePLoS pathogens2022

Selective modulation of cell surface proteins during vaccinia infection: A resource for identifying viral immune evasion strategies.

Delphine M Depierreux, Arwen F Altenburg, Lior Soday, Alice Fletcher-Etherington, Robin Antrobus, Brian J Ferguson, Michael P Weekes, Geoffrey L Smith

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Delphine M DepierreuxDepartment of Pathology, University of Cambridge, United Kingdom.
Arwen F AltenburgDepartment of Pathology, University of Cambridge, United Kingdom.
Lior SodayCambridge Institute for Medical Research, University of Cambridge, United Kingdom.
Alice Fletcher-EtheringtonCambridge Institute for Medical Research, University of Cambridge, United Kingdom.
Robin AntrobusCambridge Institute for Medical Research, University of Cambridge, United Kingdom.
Brian J FergusonDepartment of Pathology, University of Cambridge, United Kingdom.
Michael P WeekesCambridge Institute for Medical Research, University of Cambridge, United Kingdom.ORCID 0000-0003-3196-5545
Geoffrey L SmithDepartment of Pathology, University of Cambridge, United Kingdom.ORCID 0000-0002-3730-9955
University of Cambridge · GB

Funding

Medical Research Council MR/M019810/1Wellcome Trust 090315Wellcome Trust 108070/Z/15/Z
6 · The paper itself

Abstract

The interaction between immune cells and virus-infected targets involves multiple plasma membrane (PM) proteins. A systematic study of PM protein modulation by vaccinia virus (VACV), the paradigm of host regulation, has the potential to reveal not only novel viral immune evasion mechanisms, but also novel factors critical in host immunity. Here, >1000 PM proteins were quantified throughout VACV infection, revealing selective downregulation of known T and NK cell ligands including HLA-C, downregulation of cytokine receptors including IFNAR2, IL-6ST and IL-10RB, and rapid inhibition of expression of certain protocadherins and ephrins, candidate activating immune ligands. Downregulation of most PM proteins occurred via a proteasome-independent mechanism. Upregulated proteins included a decoy receptor for TRAIL. Twenty VACV-encoded PM proteins were identified, of which five were not recognised previously as such. Collectively, this dataset constitutes a valuable resource for future studies on antiviral immunity, host-pathogen interaction, poxvirus biology, vector-based vaccine design and oncolytic therapy.

Indexed as

Communicable DiseasesPoxviridaeVacciniaHumansImmune EvasionMembrane ProteinsVaccinia virusMembrane Proteins

Identifiers

PMID35727847
PMCPMC9307158
OpenAlexW4283265069

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.