Evidence map›Paper›PMID 35727544›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

A Metabarcoding Protocol to Analyze Coastal Planktic Communities Collected by Desalination Plant Filters: From Sampling to Bioinformatic Exploratory Analyses.

Matteo Cecchetto, Andrea Di Cesare, Ester Eckert, Isabella Moro, Diego Fontaneto, Stefano Schiaparelli

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Matteo CecchettoItalian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy. matteocecchetto@gmail.com.ORCID 0000-0002-4505-4104
Andrea Di CesareNational Research Council of Italy, Water Research Institute (CNR-IRSA), Verbania Pallanza, Italy.ORCID 0000-0002-5481-6182
Ester EckertNational Research Council of Italy, Water Research Institute (CNR-IRSA), Verbania Pallanza, Italy.ORCID 0000-0002-7314-1715
Isabella MoroDepartment of Biology, University of Padova, Padua, Italy.ORCID 0000-0002-7850-6031
Diego FontanetoNational Research Council of Italy, Water Research Institute (CNR-IRSA), Verbania Pallanza, Italy.ORCID 0000-0002-5770-0353
Stefano SchiaparelliItalian National Antarctic Museum (MNA, Section of Genoa), University of Genoa, Genoa, Italy.ORCID 0000-0002-0137-3605
Water Research Institute · ITUniversity of Genoa · ITUniversity of Padua · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The temporal dynamics of coastal planktic communities can be disclosed through DNA metabarcoding on the filters of reverse-osmosis desalination plants. Here, we describe the steps that are necessary to process the filters in order to create the subsamples used for DNA extraction and the bioinformatic pipeline to perform the first exploratory analyses on this kind of dataset.

Indexed as

Computational BiologyPlantsDNA Barcoding, TaxonomicFiltrationBioinformatic protocolCoastal planktonDesalination plantDNA metabarcodingMonitoring

Identifiers

PMID35727544
OpenAlexW4285299091

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.