ArticleBulletin of mathematical biology2022
Orchard Networks are Trees with Additional Horizontal Arcs.
Article in Bulletin of mathematical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
8 citing papers in PubMed.
- Characterizing semi-directed phylogenetic networks and their multi-rootable variants.Theory in biosciences = Theorie in den Biowissenschaften · 2025Article
- Spaces of ranked tree-child networks.Journal of mathematical biology · 2025Article
- Counting Cherry Reduction Sequences in Phylogenetic Tree-Child Networks is Counting Linear Extensions.Bulletin of mathematical biology · 2024Article
- Phylogenetic network classes through the lens of expanding covers.Journal of mathematical biology · 2024Article
- Generation of Orchard and Tree-Child Networks.Bulletin of mathematical biology · 2023Article
- Constructing phylogenetic networks via cherry picking and machine learning.Algorithms for molecular biology : AMB · 2023Article
- Autopolyploidy, Allopolyploidy, and Phylogenetic Networks with Horizontal Arcs.Bulletin of mathematical biology · 2023Article
- Classes of explicit phylogenetic networks and their biological and mathematical significance.Journal of mathematical biology · 2022Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Phylogenetic networks are used in biology to represent evolutionary histories. The class of orchard phylogenetic networks was recently introduced for their computational benefits, without any biological justification. Here, we show that orchard networks can be interpreted as trees with additional horizontal arcs. Therefore, they are closely related to tree-based networks, where the difference is that in tree-based networks the additional arcs do not need to be horizontal. Then, we use this new characterization to show that the space of orchard networks on n leaves with k reticulations is connected under the rNNI rearrangement move with diameter [Formula: see text].
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.