Evidence map›Paper›PMID 35725842›Full record

ArticleNature communications2022

Satellite repeat transcripts modulate heterochromatin condensates and safeguard chromosome stability in mouse embryonic stem cells.

Clara Lopes Novo, Emily V Wong, Colin Hockings, Chetan Poudel, Eleanor Sheekey, Meike Wiese, Hanneke Okkenhaug, Simon J Boulton, Srinjan Basu, Simon Walker and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. The role of satellite DNA-enriched heterochromatic variants in reproductive disorders: Insights from standardized cytogenetic analysis.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Satellite DNAs rising from the transposon graveyards.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Repetitive Sequence Stability in Embryonic Stem Cells.International journal of molecular sciences · 2024
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Clara Lopes NovoEpigenetics Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK. clara.novo@gmail.com.ORCID 0000-0003-1435-4136
Emily V WongDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.
Colin HockingsDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, CB3 0AS, UK.
Chetan PoudelDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, CB3 0AS, UK.ORCID 0000-0002-8512-9238
Eleanor SheekeyEpigenetics Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK.ORCID 0000-0002-1501-550X
Meike WieseWellcome - Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, Cambridge, CB2 1QR, UK.ORCID 0000-0002-7476-5685
Hanneke OkkenhaugImaging Facility, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK.
Simon J BoultonThe Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID 0000-0001-6936-6834
Srinjan BasuWellcome - Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, Cambridge, CB2 1QR, UK.ORCID 0000-0002-1080-979X
Simon WalkerImaging Facility, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK.
Gabriele S Kaminski SchierleDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, CB3 0AS, UK.ORCID 0000-0002-1843-2202
Geeta J NarlikarDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-1920-0147
Peter J Rugg-GunnEpigenetics Programme, The Babraham Institute, Babraham Research Campus, Cambridge, CB22 3AT, UK. peter.rugg-gunn@babraham.ac.uk.ORCID 0000-0002-9601-5949
Babraham Institute · GBUniversity of Cambridge · GBUniversity of California, San Francisco · USWellcome/MRC Cambridge Stem Cell Institute · GBThe Francis Crick Institute · GB

Funding

Measuring the lifetime and mechanical stability of phase-separated heterochromatin domainsR35GM127020 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GEETA J NARLIKAR · 2018 to 2026
$7.3M
Biotechnology and Biological Sciences Research Council BB/M022285/1Biotechnology and Biological Sciences Research Council BBS/E/B/000C0421Biotechnology and Biological Sciences Research Council BBS/E/B/000C0422Cancer Research UK FC0010048Medical Research Council FC0010048Medical Research Council MC_PC_17230Medical Research Council MR/T011769/1NIGMS NIH HHS R35 GM127020Wellcome TrustWellcome Trust 2023151/Z/16/ZWellcome Trust FC0010048
6 · The paper itself

Abstract

Heterochromatin maintains genome integrity and function, and is organised into distinct nuclear domains. Some of these domains are proposed to form by phase separation through the accumulation of HP1ɑ. Mouse heterochromatin contains noncoding major satellite repeats (MSR), which are highly transcribed in mouse embryonic stem cells (ESCs). Here, we report that MSR transcripts can drive the formation of HP1ɑ droplets in vitro, and modulate heterochromatin into dynamic condensates in ESCs, contributing to the formation of large nuclear domains that are characteristic of pluripotent cells. Depleting MSR transcripts causes heterochromatin to transition into a more compact and static state. Unexpectedly, changing heterochromatin's biophysical properties has severe consequences for ESCs, including chromosome instability and mitotic defects. These findings uncover an essential role for MSR transcripts in modulating the organisation and properties of heterochromatin to preserve genome stability. They also provide insights into the processes that could regulate phase separation and the functional consequences of disrupting the properties of heterochromatin condensates.

Indexed as

HeterochromatinMouse Embryonic Stem CellsAnimalsChromosomal InstabilityEmbryonic Stem CellsHistonesMiceHeterochromatinHistones

Identifiers

PMID35725842
PMCPMC9209518
OpenAlexW4283165307

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.