Evidence map›Paper›PMID 35725490›Full record

ArticleBiotechnology for biofuels and bioproducts2022

Mapping the deformability of natural and designed cellulosomes in solution.

Jonathan Dorival, Sarah Moraïs, Aurore Labourel, Bartosz Rozycki, Pierre-Andre Cazade, Jérôme Dabin, Eva Setter-Lamed, Itzhak Mizrahi, Damien Thompson, Aurélien Thureau and 2 more

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels and bioproducts, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Current challenges in designer cellulosome engineering.Applied microbiology and biotechnology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 5 countries.

Jonathan DorivalIntegrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), Sorbonne Université, CNRS, 29680, Roscoff, Bretagne, France.
Sarah MoraïsDepartment of Biomolecular Sciences, The Weizmann Institute of Science, 7610001, Rehovot, Israel.
Aurore LabourelTBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
Bartosz RozyckiInstitute of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668, Warsaw, Poland.
Pierre-Andre CazadeDepartment of Physics, Bernal Institute, University of Limerick, Limerick, Ireland.
Jérôme DabinIntegrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), Sorbonne Université, CNRS, 29680, Roscoff, Bretagne, France.
Eva Setter-LamedDepartment of Biomolecular Sciences, The Weizmann Institute of Science, 7610001, Rehovot, Israel.
Itzhak MizrahiFaculty of Natural Sciences, Ben-Gurion University of the Negev, 8499000, Beer-Sheva, Israel.
Damien ThompsonDepartment of Physics, Bernal Institute, University of Limerick, Limerick, Ireland.
Aurélien ThureauSynchrotron SOLEIL, 91190, Saint Aubin, France.
Edward A BayerDepartment of Biomolecular Sciences, The Weizmann Institute of Science, 7610001, Rehovot, Israel.
Mirjam CzjzekIntegrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), Sorbonne Université, CNRS, 29680, Roscoff, Bretagne, France. czjzek@sb-roscoff.fr.ORCID http://orcid.org/0000-0002-7483-2841
Centre National de la Recherche Scientifique · FRBen-Gurion University of the Negev · ILUniversity of Limerick · IEPolish Academy of Sciences · PLSynchrotron soleil · FRWeizmann Institute of Science · IL

Funding

ADEME ERANET IB 1201C0104FP7 Nanosciences, Nanotechnologies, Materials and new Production Technologies 604530Narodowym Centrum Nauki 2016/21/B/NZ1/00006
6 · The paper itself

Abstract

backgroundNatural cellulosome multi-enzyme complexes, their components, and engineered 'designer cellulosomes' (DCs) promise an efficient means of breaking down cellulosic substrates into valuable biofuel products. Their broad uptake in biotechnology relies on boosting proximity-based synergy among the resident enzymes, but the modular architecture challenges structure determination and rational design.

resultsWe used small angle X-ray scattering combined with molecular modeling to study the solution structure of cellulosomal components. These include three dockerin-bearing cellulases with distinct substrate specificities, original scaffoldins from the human gut bacterium Ruminococcus champanellensis (ScaA, ScaH and ScaK) and a trivalent cohesin-bearing designer scaffoldin (Scaf20L), followed by cellulosomal complexes comprising these components, and the nonavalent fully loaded Clostridium thermocellum CipA in complex with Cel8A from the same bacterium. The size analysis of R

conclusionsOur data quantifies variability of form and compactness of cellulosomal components in solution and confirms that this native plasticity may well be related to speciation with respect to the substrate that is targeted. By showing that scaffoldins or components display enhanced compactness compared to the free objects, we provide new routes to rationally enhance their stability and performance in their environment of action.

Indexed as

BionanomachineryDesigner cellulosomesMolecular modelingMulti-enzyme complexSAXSScaffoldinsSelf-assembly

Identifiers

PMID35725490
PMCPMC9210761
OpenAlexW4283160278

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.