Evidence map›Paper›PMID 35720320›Full record

ArticleFrontiers in immunology2022

Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation.

Liyi Chen, Chong Liu, Tuo Liang, Zhen Ye, Shengsheng Huang, Jiarui Chen, Xuhua Sun, Ming Yi, Chenxing Zhou, Jie Jiang and 12 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 2 institutions in 1 country.

Liyi ChenSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Chong LiuSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Tuo LiangSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Zhen YeSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Shengsheng HuangSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Jiarui ChenSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Xuhua SunSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Ming YiSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Chenxing ZhouSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Jie JiangSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Tianyou ChenSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Hao LiSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Wuhua ChenSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Hao GuoSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Wenkang ChenSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Yuanlin YaoSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Shian LiaoSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Chaojie YuSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Shaofeng WuSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Binguang FanSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Zhaoping GanDepartment of Hematology, Guangxi Medical University First Affiliated Hospital, Nanning, China.
Xinli ZhanSpine and Osteopathy Ward, Guangxi Medical University First Affiliated Hospital, Nanning, China.
First Affiliated Hospital of GuangXi Medical University · CNGuangxi Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: The purpose of this article was to investigate the mechanism of immune dysregulation of COVID-19-related proteins in spinal tuberculosis (STB). Methods: Clinical data were collected to construct a nomogram model. C-index, calibration curve, ROC curve, and DCA curve were used to assess the predictive ability and accuracy of the model. Additionally, 10 intervertebral disc samples were collected for protein identification. Bioinformatics was used to analyze differentially expressed proteins (DEPs), including immune cells analysis, Gene Ontology (GO) and KEGG pathway enrichment analysis, and protein-protein interaction networks (PPI). Results: The nomogram predicted risk of STB ranging from 0.01 to 0.994. The C-index and AUC in the training set were 0.872 and 0.862, respectively. The results in the external validation set were consistent with the training set. Immune cells scores indicated that B cells naive in STB tissues were significantly lower than non-TB spinal tissues. Hub proteins were calculated by Degree, Closeness, and MCC methods. The main KEGG pathway included Coronavirus disease-COVID-19. There were 9 key proteins in the intersection of COVID-19-related proteins and hub proteins. There was a negative correlation between B cells naive and RPL19. COVID-19-related proteins were associated with immune genes. Conclusion: Lymphocytes were predictive factors for the diagnosis of STB. Immune cells showed low expression in STB. Nine COVID-19-related proteins were involved in STB mechanisms. These nine key proteins may suppress the immune mechanism of STB by regulating the expression of immune genes.

Indexed as

COVID-19Tuberculosis, SpinalComputational BiologyGene OntologyHumansProtein Interaction MapsCOVID-19immune cellKEGG pathwaynomogramspinal tuberculosis

Identifiers

PMID35720320
PMCPMC9202521
OpenAlexW4281630657

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.