Evidence map›Paper›PMID 35719949›Full record

ArticleFrontiers in oncology2022

Patient-Derived Organoid Serves as a Platform for Personalized Chemotherapy in Advanced Colorectal Cancer Patients.

Khamushavalli Geevimaan, Jing-You Guo, Chia-Ning Shen, Jeng-Kai Jiang, Cathy S J Fann, Ming-Jing Hwang, Jr-Wen Shui, Hsiu-Ting Lin, Mei-Jung Wang, Hsuan-Cheng Shih and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

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  17. The role of organoids in cancer research.Experimental hematology & oncology · 2023
    Review
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  19. Cutoff value of ICiScience · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Khamushavalli GeevimaanInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Jing-You GuoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chia-Ning ShenGenomic Research Center, Academia Sinica, Taipei, Taiwan.
Jeng-Kai JiangDivision of Colon and Rectal Surgery, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Cathy S J FannInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Ming-Jing HwangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Jr-Wen ShuiInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Hsiu-Ting LinInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Mei-Jung WangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Hsuan-Cheng ShihInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Anna Fen-Yau LiDepartment of Pathology, Taipei Veterans General Hospital, Taipei, Taiwan.
Shih-Ching ChangDivision of Colon and Rectal Surgery, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Shung-Haur YangDivision of Colon and Rectal Surgery, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Jeou-Yuan ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Institute of Biomedical Sciences, Academia Sinica · TWNational Yang Ming Chiao Tung University · TWTaipei Veterans General Hospital · TWGenomics Research Center, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Addition of oxaliplatin to adjuvant 5-FU has significantly improved the disease-free survival and served as the first line adjuvant chemotherapy in advanced colorectal cancer (CRC) patients. However, a fraction of patients remains refractory to oxaliplatin-based treatment. It is urgent to establish a preclinical platform to predict the responsiveness toward oxaliplatin in CRC patients as well as to improve the efficacy in the resistant patients. Methods: A living biobank of organoid lines were established from advanced CRC patients. Oxaliplatin sensitivity was assessed in patient-derived tumor organoids (PDOs) Results: Oxaliplatin sensitivity in PDOs was shown to correlate to oxaliplatin-mediated inhibition on PDO xenograft tumors in mice, and parallelled clinical outcomes of CRC patients who received FOLFOX treatment. Molecular profiling of transcriptomes revealed oxaliplatin-resistant and -sensitive PDOs as two separate entities, each being characterized with distinct hallmarks and gene sets. Using Leave-One-Out Cross Validation algorithm and Logistic Regression model, 18 gene signatures were identified as predictive biomarkers for oxaliplatin response. Candidate drugs identified by oxaliplatin response signature-based strategies, including inhibitors targeting c-ABL and Notch pathway, DNA/RNA synthesis inhibitors, and HDAC inhibitors, were demonstrated to potently and effectively increase oxaliplatin sensitivity in the resistant PDOs. Conclusions: PDOs are useful in informing decision-making on oxaliplatin-based chemotherapy and in designing personalized chemotherapy in CRC patients.

Indexed as

colorectal cancerconnectivity mapoxaliplatin sensitivity assessmentpatient-derived organoids (PDOs)personalized chemotherapy

Identifiers

PMID35719949
PMCPMC9205170
OpenAlexW4281746047

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.