Evidence map›Paper›PMID 35718832›Full record

ArticleJournal of human genetics2022

Patterns and distribution of de novo mutations in multiplex Middle Eastern families.

Muhammad Kohailan, Waleed Aamer, Najeeb Syed, Sujitha Padmajeya, Sura Hussein, Amira Sayed, Jyothi Janardhanan, Sasirekha Palaniswamy, Nady El Hajj, Ammira Al-Shabeeb Akil and 1 more

Abstract read
In one paragraph

Article in Journal of human genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Effect of methylation on genome mutability in cattle.Genetics, selection, evolution : GSE · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Muhammad KohailanCollege of Health and Life Sciences, Hamad Bin Khalifa University, P.O. Box 34110, Doha, Qatar.ORCID http://orcid.org/0000-0001-5950-7939
Waleed AamerDepartment of Human Genetics, Sidra Medicine, P.O. Box 26999, Doha, Qatar.ORCID http://orcid.org/0000-0002-1324-3509
Najeeb SyedBiomedical Informatics Division, Sidra Medicine, P.O. Box 26999, Doha, Qatar.
Sujitha PadmajeyaDepartment of Human Genetics, Sidra Medicine, P.O. Box 26999, Doha, Qatar.
Sura HusseinDepartment of Human Genetics, Sidra Medicine, P.O. Box 26999, Doha, Qatar.
Amira SayedDepartment of Human Genetics, Sidra Medicine, P.O. Box 26999, Doha, Qatar.
Jyothi JanardhananDepartment of Human Genetics, Sidra Medicine, P.O. Box 26999, Doha, Qatar.
Sasirekha PalaniswamyDepartment of Human Genetics, Sidra Medicine, P.O. Box 26999, Doha, Qatar.ORCID http://orcid.org/0000-0003-3317-9775
Nady El HajjCollege of Health and Life Sciences, Hamad Bin Khalifa University, P.O. Box 34110, Doha, Qatar.
Ammira Al-Shabeeb AkilDepartment of Human Genetics, Sidra Medicine, P.O. Box 26999, Doha, Qatar.
Khalid A FakhroCollege of Health and Life Sciences, Hamad Bin Khalifa University, P.O. Box 34110, Doha, Qatar. kfakhro@sidra.org.ORCID http://orcid.org/0000-0002-3150-1276

Funding

Qatar National Research Fund (QNRF) NPRP10-0202-170320Qatar National Research Fund (QNRF) NPRP11S-0110-180250
6 · The paper itself

Abstract

While de novo mutations (DNMs) are key to genetic diversity, they are also responsible for a high number of rare disorders. To date, no study has systematically examined the rate and distribution of DNMs in multiplex families in highly consanguineous populations. Leveraging WGS profiles of 645 individuals in 146 families, we implemented a combinatorial approach using 3 complementary tools for DNM discovery in 353 unique trio combinations. We found a total of 27,168 DNMs (median: 70 single-nucleotide and 6 insertion-deletions per individual). Phasing revealed around 80% of DNMs were paternal in origin. Notably, using whole-genome methylation data of spermatogonial stem cells, these DNMs were significantly more likely to occur at highly methylated CpGs (OR: 2.03; p value = 6.62 × 10

Indexed as

FamilyINDEL MutationConsanguinityHumansMiddle EastMutationNucleotidesNucleotides

Identifiers

PMID35718832
PMCPMC9510050

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.