Evidence map›Paper›PMID 35717539›Full record

ArticleScientific reports2022

Virtual histological staining of label-free total absorption photoacoustic remote sensing (TA-PARS).

Marian Boktor, Benjamin R Ecclestone, Vlad Pekar, Deepak Dinakaran, John R Mackey, Paul Fieguth, Parsin Haji Reza

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Single color digital H&E staining with In-and-Out Net.Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Engineering the future of 3D pathology.The journal of pathology. Clinical research · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Marian BoktorPhotoMedicine Labs, Systems Design Engineering, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
Benjamin R EcclestonePhotoMedicine Labs, Systems Design Engineering, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
Vlad PekarPhotoMedicine Labs, Systems Design Engineering, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
Deepak DinakaranCross Cancer Institute, Department of Oncology, University of Alberta, 116 St and 85 Ave, Edmonton, AB, T6G 2V1, Canada.
John R MackeyCross Cancer Institute, Department of Oncology, University of Alberta, 116 St and 85 Ave, Edmonton, AB, T6G 2V1, Canada.
Paul FieguthSystems Design Engineering, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
Parsin Haji RezaPhotoMedicine Labs, Systems Design Engineering, University of Waterloo, Waterloo, ON, N2L 3G1, Canada. phajireza@uwaterloo.ca.
University of Waterloo · CAIllumisonics (Canada) · CAUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histopathological visualizations are a pillar of modern medicine and biological research. Surgical oncology relies exclusively on post-operative histology to determine definitive surgical success and guide adjuvant treatments. The current histology workflow is based on bright-field microscopic assessment of histochemical stained tissues and has some major limitations. For example, the preparation of stained specimens for brightfield assessment requires lengthy sample processing, delaying interventions for days or even weeks. Therefore, there is a pressing need for improved histopathology methods. In this paper, we present a deep-learning-based approach for virtual label-free histochemical staining of total-absorption photoacoustic remote sensing (TA-PARS) images of unstained tissue. TA-PARS provides an array of directly measured label-free contrasts such as scattering and total absorption (radiative and non-radiative), ideal for developing H&E colorizations without the need to infer arbitrary tissue structures. We use a Pix2Pix generative adversarial network to develop visualizations analogous to H&E staining from label-free TA-PARS images. Thin sections of human skin tissue were first virtually stained with the TA-PARS, then were chemically stained with H&E producing a one-to-one comparison between the virtual and chemical staining. The one-to-one matched virtually- and chemically- stained images exhibit high concordance validating the digital colorization of the TA-PARS images against the gold standard H&E. TA-PARS images were reviewed by four dermatologic pathologists who confirmed they are of diagnostic quality, and that resolution, contrast, and color permitted interpretation as if they were H&E. The presented approach paves the way for the development of TA-PARS slide-free histological imaging, which promises to dramatically reduce the time from specimen resection to histological imaging.

Indexed as

MicroscopyRemote Sensing TechnologyHumansMicrotomyStaining and LabelingWorkflow

Identifiers

PMID35717539
PMCPMC9206643
OpenAlexW4283074486

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.