Evidence map›Paper›PMID 35716664›Full record

ArticleStructure (London, England : 1993)2022

Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain.

Katherine H Reiter, Alex Zelter, Maria K Janowska, Michael Riffle, Nicholas Shulman, Brendan X MacLean, Kaipo Tamura, Matthew C Chambers, Michael J MacCoss, Trisha N Davis and 3 more

Open access · greenAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Biochemical analysis of PD-L1 ubiquitination by CRL3Structure (London, England : 1993) · 2025
    Article
  4. Chemical Tools for Probing the Ub/Ubl Conjugation Cascades.Chembiochem : a European journal of chemical biology · 2025
    Review
  5. Capturing the catalytic intermediates of parkin ubiquitination.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Structural basis for ubiquitylation by HOIL-1.Frontiers in molecular biosciences · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Katherine H ReiterDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Alex ZelterDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Maria K JanowskaDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Michael RiffleDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Nicholas ShulmanDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Brendan X MacLeanDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Kaipo TamuraDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Matthew C ChambersDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Michael J MacCossDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Trisha N DavisDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Miklos GuttmanDepartment of Medicinal Chemistry, University of Washington, Seattle, WA 98195, USA.
Peter S BrzovicDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Rachel E KlevitDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. Electronic address: klevit@uw.edu.
University of Washington · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Structural and Functional Characterization of BRCA1/BARD1R01GM088055 · NIGMS · UNIVERSITY OF WASHINGTON · PI KLEVIT, RACHEL E · 2009 to 2020
$6.5M
Biological Mechanisms of Healthy Aging Training GrantT32AG066574 · NIA · UNIVERSITY OF WASHINGTON · PI David J. Marcinek, Jessica E Young · 2020 to 2026
$5.3M
Mechanisms of IgM mediated activation of the complement systemR01AI153191 · NIAID · UNIVERSITY OF WASHINGTON · PI GUTTMAN, MIKLOS · 2021 to 2025
$2.4M
Emerging Mechanistic Strategies of RING-Between-RING Ubiquitin LigasesF32GM120797 · NIGMS · UNIVERSITY OF WASHINGTON · PI REITER, KATHERINE · 2017 to 2018
$116k
NIAID NIH HHS R01 AI153191NIA NIH HHS T32 AG066574NIGMS NIH HHS F32 GM120797NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM088055
6 · The paper itself

Abstract

RING-between-RING (RBR) E3 ligases mediate ubiquitin transfer through an obligate E3-ubiquitin thioester intermediate prior to substrate ubiquitination. Although RBRs share a conserved catalytic module, substrate recruitment mechanisms remain enigmatic, and the relevant domains have yet to be identified for any member of the class. Here we characterize the interaction between the auto-inhibited RBR, HHARI (AriH1), and its target protein, 4EHP, using a combination of XL-MS, HDX-MS, NMR, and biochemical studies. The results show that (1) a di-aromatic surface on the catalytic HHARI Rcat domain forms a binding platform for substrates and (2) a phosphomimetic mutation on the auto-inhibitory Ariadne domain of HHARI promotes release and reorientation of Rcat for transthiolation and substrate modification. The findings identify a direct binding interaction between a RING-between-RING ligase and its substrate and suggest a general model for RBR substrate recognition.

Indexed as

Cullin ProteinsUbiquitinCatalytic DomainUbiquitinationUbiquitin-Protein LigasesCullin ProteinsUbiquitinUbiquitin-Protein Ligases4EHPAriH1HDX-MSHHARImono-ubiquitinationRING-between-RINGubiquitinXL-MS

Identifiers

PMID35716664
PMCPMC9444911
OpenAlexW4283031070

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.