Evidence map›Paper›PMID 35716063›Full record

ArticleJournal of extracellular vesicles2022

Ascorbate peroxidase-mediated in situ labelling of proteins in secreted exosomes.

Byung Rho Lee, Tae Jin Lee, Sekyung Oh, Chenglong Li, Jin-Hyuk A Song, Brendan Marshall, Wenbo Zhi, Sang-Ho Kwon

Open access · goldAbstract read
In one paragraph

Article in Journal of extracellular vesicles, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Extracellular Vesicle MicroRNA in the Kidney.Comprehensive Physiology · 2023
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Byung Rho LeeDepartment of Cellular Biology and Anatomy, Medical College of Georgia, Augusta University, Augusta, Georgia, USA.
Tae Jin LeeCenter for Biotechnology and Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, Georgia, USA.
Sekyung OhDepartment of Medical Science, Catholic Kwandong University College of Medicine, Incheon, South Korea.ORCID 0000-0002-6880-5281
Chenglong LiDepartment of Cellular Biology and Anatomy, Medical College of Georgia, Augusta University, Augusta, Georgia, USA.
Jin-Hyuk A SongDepartment of Cellular Biology and Anatomy, Medical College of Georgia, Augusta University, Augusta, Georgia, USA.
Brendan MarshallDepartment of Cellular Biology and Anatomy, Medical College of Georgia, Augusta University, Augusta, Georgia, USA.
Wenbo ZhiCenter for Biotechnology and Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, Georgia, USA.
Sang-Ho KwonDepartment of Cellular Biology and Anatomy, Medical College of Georgia, Augusta University, Augusta, Georgia, USA.ORCID 0000-0001-9074-4641
Augusta University · USCatholic Kwandong University · KR

Funding

Regulation of exosome release and its role in acute kidney injury.R01DK120510 · NIDDK · AUGUSTA UNIVERSITY · PI KWON, KENNETH · 2019 to 2023
$1.7M
A novel approach to detect exosome-localized proteins and its application in breast cancer detectionR21CA229370 · NCI · AUGUSTA UNIVERSITY · PI KWON, KENNETH · 2019 to 2020
$367k
NCI NIH HHS R21 CA229370NIDDK NIH HHS R01 DK120510
6 · The paper itself

Abstract

The extracellular vesicle exosome mediates intercellular communication by transporting macromolecules such as proteins and ribonucleic acids (RNAs). Determining cargo contents with high accuracy will help decipher the biological processes that exosomes mediate in various contexts. Existing methods for probing exosome cargo molecules rely on a prior exosome isolation procedure. Here we report an in situ labelling approach for exosome cargo identification, which bypasses the exosome isolation steps. In this methodology, a variant of the engineered ascorbate peroxidase APEX, fused to an exosome cargo protein such as CD63, is expressed specifically in exosome-generating vesicles in live cells or in secreted exosomes in the conditioned medium, to induce biotinylation of the proteins in the vicinity of the APEX variant for a short period of time. Mass spectrometry analysis of the proteins biotinylated by this approach in exosomes secreted by kidney proximal tubule-derived cells reveals that oxidative stress can cause ribosomal proteins to accumulate in an exosome subpopulation that contains the CD63-fused APEX variant.

Indexed as

ExosomesAscorbate PeroxidasesBiological TransportCell CommunicationProteinsAscorbate PeroxidasesProteinsAPEXexosomesextracellular vesiclesoxidative stressproximity labelling

Identifiers

PMID35716063
PMCPMC9206227
OpenAlexW4283076049

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.