Evidence map›Paper›PMID 35715421›Full record

ArticleNPJ systems biology and applications2022

Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer.

Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier Harismendy

Open access · goldAbstract read
In one paragraph

Article in NPJ systems biology and applications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Alexander T Wenzel *UC San Diego Bioinformatics and Systems Biology Graduate Program, San Diego, CA, USA.ORCID 0000-0002-2056-2938
Devora Champa *Moores UCSD Cancer Center, University of California San Diego School of Medicine, San Diego, CA, USA.
Hrishi VenkateshUC San Diego Contiguous Bachelors-Masters program, San Diego, CA, USA.ORCID 0000-0002-2938-3856
Si SunMoores UCSD Cancer Center, University of California San Diego School of Medicine, San Diego, CA, USA.
Cheng-Yu TsaiMoores UCSD Cancer Center, University of California San Diego School of Medicine, San Diego, CA, USA.ORCID 0000-0002-6351-1858
Jill P MesirovDivision of Medical Genetics, Department of Medicine, University of California San Diego School of Medicine, San Diego, CA, USA.
Jack D BuiDepartment of Pathology, University of California San Diego School of Medicine, San Diego, CA, USA.
Stephen B HowellMoores UCSD Cancer Center, University of California San Diego School of Medicine, San Diego, CA, USA. showell@health.ucsd.edu.
Olivier HarismendyMoores UCSD Cancer Center, University of California San Diego School of Medicine, San Diego, CA, USA. oharismendy@ucsd.edu.ORCID 0000-0002-8098-9888
University of California San Diego · USArnold Ventures · USUC San Diego Health System · USUnion Hospital · CNUniversity of Minnesota · US

Funding

Using Networks to Seed Hierarchical Whole-cell Models of CancerU54CA209891 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2017 to 2021
$10.9M
San Diego Biomedical Informatics Education & Research (SABER)T15LM011271 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHAMIM NEMATI · 2012 to 2026
$9.7M
GenePattern and GenePattern Notebook: Integrative 'Omic Analysis for Cancer ResearchU24CA248457 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P., TAMAYO, PABLO · 2020 to 2024
$4.6M
Supporting and evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for cancer researchU24CA220341 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P., TAMAYO, PABLO · 2018 to 2022
$3.4M
GenePattern Notebooks for Cancer ResearchU24CA194107 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MESIROV, JILL P. · 2015 to 2019
$2.8M
In vivo detection and genome-wide location analysis of DNA-adductsR21CA177519 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HARISMENDY, OLIVIER, HOWELL, STEPHEN B · 2013 to 2015
$667k
Methods for improved detection of activated molecular pathways in cancerF31CA257344 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WENZEL, ALEXANDER THOMAS · 2021 to 2023
$122k
NCI NIH HHS F31 CA257344NCI NIH HHS R21 CA177519NCI NIH HHS U24 CA194107NCI NIH HHS U24 CA220341NCI NIH HHS U24 CA248457NCI NIH HHS U54 CA209891NLM NIH HHS T15 LM011271
6 · The paper itself

Abstract

The molecular underpinnings of acquired resistance to carboplatin are poorly understood and often inconsistent between in vitro modeling studies. After sequential treatment cycles, multiple isogenic clones reached similar levels of resistance, but significant transcriptional heterogeneity. Gene-expression based virtual synchronization of 26,772 single cells from 2 treatment steps and 4 resistant clones was used to evaluate the activity of Hallmark gene sets in proliferative (P) and quiescent (Q) phases. Two behaviors were associated with resistance: (1) broad repression in the P phase observed in all clones in early resistant steps and (2) prevalent induction in Q phase observed in the late treatment step of one clone. Furthermore, the induction of IFNα response in P phase or Wnt-signaling in Q phase were observed in distinct resistant clones. These observations suggest a model of resistance hysteresis, where functional alterations of the P and Q phase states affect the dynamics of the successive transitions between drug exposure and recovery, and prompts for a precise monitoring of single-cell states to develop more effective schedules for, or combination of, chemotherapy treatments.

Indexed as

Ovarian NeoplasmsCarboplatinFemaleHumansCarboplatin

Identifiers

PMID35715421
PMCPMC9206019
OpenAlexW4283009136

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.