Evidence map›Paper›PMID 35714609›Full record

ArticleCell2022

Thymic epithelial cells co-opt lineage-defining transcription factors to eliminate autoreactive T cells.

Daniel A Michelson, Koji Hase, Tsuneyasu Kaisho, Christophe Benoist, Diane Mathis

Abstract read
In one paragraph

Article in Cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 143 papers.

0numbers the graph read from it
0cells of the map it votes in
143citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

143 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Rag1-based time-stamp tracing of T-cell developmental origins.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Runx3 instructs AireJournal of autoimmunity · 2026
    Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

83 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Daniel A MichelsonDepartment of Immunology, Harvard Medical School, Boston, MA 02115, USA.
Koji HaseDivision of Biochemistry, Faculty of Pharmacy and Graduate School of Pharmaceutical Science, Keio University, Minato-ku, Tokyo 105-8512, Japan.
Tsuneyasu KaishoDepartment of Immunology, Institute of Advanced Medicine, Wakayama Medical University, Wakayama 641-8509, Japan.
Christophe BenoistDepartment of Immunology, Harvard Medical School, Boston, MA 02115, USA.
Diane MathisDepartment of Immunology, Harvard Medical School, Boston, MA 02115, USA. Electronic address: dm@hms.harvard.edu.

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
AIRE, a zinc-finger protein that controls autoimmunityR01DK060027 · NIDDK · JOSLIN DIABETES CENTER · PI DIANE J MATHIS · 2002 to 2026
$7.4M
The molecular mechanism of Aire: partnering with DNA-PKR01AI088204 · NIAID · HARVARD MEDICAL SCHOOL · PI DIANE J MATHIS · 2011 to 2026
$5.7M
NIAID NIH HHS R01 AI088204NIDDK NIH HHS R01 DK060027NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Medullary thymic epithelial cells (mTECs) ectopically express thousands of peripheral-tissue antigens (PTAs), which drive deletion or phenotypic diversion of self-reactive immature T cells during thymic differentiation. Failure of PTA expression causes multiorgan autoimmunity. By assaying chromatin accessibility in individual mTECs, we uncovered signatures of lineage-defining transcription factors (TFs) for skin, lung, liver, and intestinal cells-including Grhl, FoxA, FoxJ1, Hnf4, Sox8, and SpiB-in distinct mTEC subtypes. Transcriptomic and histologic analyses showed that these subtypes, which we collectively term mimetic cells, expressed PTAs in a biologically logical fashion, mirroring extra-thymic cell types while maintaining mTEC identity. Lineage-defining TFs bound to mimetic-cell open chromatin regions and were required for mimetic cell accumulation, whereas the tolerogenic factor Aire was partially and variably required. Expression of a model antigen in mimetic cells sufficed to induce cognate T cell tolerance. Thus, mTECs co-opt lineage-defining TFs to drive mimetic cell accumulation, PTA expression, and self-tolerance.

Indexed as

Epithelial CellsT-LymphocytesAnimalsAntigensCell DifferentiationChromatinMiceMice, Inbred C57BLThymus GlandTranscription FactorsAntigensChromatinTranscription FactorsAireautoimmunitymicrofoldmimetic cellmTECT cellthymustolerancetranscription factorTreg

Identifiers

PMID35714609
PMCPMC9469465

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.