Evidence map›Paper›PMID 35714165›Full record

ArticlePLoS pathogens2022

A cellular trafficking signal in the SIV envelope protein cytoplasmic domain is strongly selected for in pathogenic infection.

Scott P Lawrence, Samra E Elser, Workineh Torben, Robert V Blair, Bapi Pahar, Pyone P Aye, Faith Schiro, Dawn Szeltner, Lara A Doyle-Meyers, Beth S Haggarty and 16 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 6 citations in OpenAlex.

  1. Mechanisms of HIV-1 assembly, release and maturation.Nature reviews. Microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 2 countries.

Scott P LawrenceMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.ORCID 0000-0002-2887-3933
Samra E ElserPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Workineh TorbenTulane National Primate Research Center, Covington, Louisiana, United States of America.
Robert V BlairTulane National Primate Research Center, Covington, Louisiana, United States of America.
Bapi PaharTulane National Primate Research Center, Covington, Louisiana, United States of America.
Pyone P AyeTulane National Primate Research Center, Covington, Louisiana, United States of America.
Faith SchiroTulane National Primate Research Center, Covington, Louisiana, United States of America.
Dawn SzeltnerTulane National Primate Research Center, Covington, Louisiana, United States of America.
Lara A Doyle-MeyersTulane National Primate Research Center, Covington, Louisiana, United States of America.
Beth S HaggartyPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Andrea P O JordanPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Josephine RomanoPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
George J LesliePerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Xavier AlvarezTulane National Primate Research Center, Covington, Louisiana, United States of America.
David H O'ConnorWisconsin National Primate Research Center, Madison, Wisconsin, United States of America.
Roger W WisemanWisconsin National Primate Research Center, Madison, Wisconsin, United States of America.
Christine M FennesseyAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Yuan LiAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Michael PiatakAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Jeffrey D LifsonAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Celia C LaBrancheDuke University Medical Center, Durham, North Carolina, United States of America.
Andrew A LacknerTulane National Primate Research Center, Covington, Louisiana, United States of America.
Brandon F KeeleAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland, United States of America.
Nicholas J ManessTulane National Primate Research Center, Covington, Louisiana, United States of America.
Mark MarshMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.ORCID 0000-0002-0213-3259
James A HoxiePerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Tulane University · USUniversity of Pennsylvania · USFrederick National Laboratory for Cancer Research · USMRC Laboratory for Molecular Cell Biology · GBDuke Medical Center · US

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Ronald G Collman · 1999 to 2026
$78.6M
Viral Testing CoreU42OD013117 · OD · JOHNS HOPKINS UNIVERSITY · PI JOSEPH L MANKOWSKI · 2017 to 2026
$10.9M
Role of SIV and HIV Env cytoplasmic tail in pathogenesis and protective immunityR01AI138782 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HOXIE, JAMES A · 2018 to 2021
$3.1M
Research Training in Experimental Medicine and PathologyT32OD011124 · OD · TULANE UNIVERSITY OF LOUISIANA · PI BLAIR, ROBERT, RAPPAPORT, JAY · 2012 to 2019
$2.7M
CCR NIH HHS HHSN261200800001CMedical Research Council MC_U12266BMedical Research Council MC_UU_00012/1Medical Research Council MC_UU00012/1Medical Research Council MR/K015826/1NCI NIH HHS 75N91019D00024NCI NIH HHS HHSN261200800001ENIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI138782NIH HHS P51 OD011104NIH HHS T32 OD011124NIH HHS U42 OD013117
6 · The paper itself

Abstract

The HIV/SIV envelope glycoprotein (Env) cytoplasmic domain contains a highly conserved Tyr-based trafficking signal that mediates both clathrin-dependent endocytosis and polarized sorting. Despite extensive analysis, the role of these functions in viral infection and pathogenesis is unclear. An SIV molecular clone (SIVmac239) in which this signal is inactivated by deletion of Gly-720 and Tyr-721 (SIVmac239ΔGY), replicates acutely to high levels in pigtail macaques (PTM) but is rapidly controlled. However, we previously reported that rhesus macaques and PTM can progress to AIDS following SIVmac239ΔGY infection in association with novel amino acid changes in the Env cytoplasmic domain. These included an R722G flanking the ΔGY deletion and a nine nucleotide deletion encoding amino acids 734-736 (ΔQTH) that overlaps the rev and tat open reading frames. We show that molecular clones containing these mutations reconstitute signals for both endocytosis and polarized sorting. In one PTM, a novel genotype was selected that generated a new signal for polarized sorting but not endocytosis. This genotype, together with the ΔGY mutation, was conserved in association with high viral loads for several months when introduced into naïve PTMs. For the first time, our findings reveal strong selection pressure for Env endocytosis and particularly for polarized sorting during pathogenic SIV infection in vivo.

Indexed as

Simian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusAnimalsEndocytosisGene Products, envMacaca mulattaMacaca nemestrinaGene Products, env

Identifiers

PMID35714165
PMCPMC9275724
OpenAlexW4283023969

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.