ArticlePloS one2022
A de novo genome assembly of cultivated Prunus persica cv. 'Sovetskiy'.
Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- NanoVar: a comprehensive workflow for structural variant detection to uncover the genome's hidden patterns.Nature protocols · 2026Review
- Mapping the genomic landscape ofHorticulture research · 2025Article
- Graph pangenome reveals the regulation of malate content in blood-fleshed peach by NAC transcription factors.Genome biology · 2025Article
- Bioinformatics in Russia: history and present-day landscape.Briefings in bioinformatics · 2024Review
- Chloroplast Genome Variation and Phylogenetic Relationships of Autochthonous Varieties ofInternational journal of molecular sciences · 2024Article
- Genome sequencing revealed the red-flower trait candidate gene of a peach landrace.Horticulture research · 2023Article
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Authors and funding
9 authors.
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Abstract
Prunus persica is one of the main stone fruit crops in Crimea and southern Russia. The P. persica genome has recently been sequenced and annotated in good quality. However, for a deeper assessment of the peach genome, it is necessary to include in the research other cultivars that are in the collection of the Nikitsky Botanical Garden. The cultivars of the Nikitsky Botanical Garden are unique and differ from Western European and American ones, as they are derived from cultivars and forms originating from Central Asian, North Caucasian, Transcaucasian and Eastern European countries. In this paper, we present the assembly of the P. persica cv. 'Sovetskiy' genome obtained using Oxford Nanopore long reads and Illumina short reads by hybrid assembly methods. The assembled genome of P. persica cv. 'Sovetskiy' is 206.26 MB in 226 scaffolds, with N50 24 Mb, including 8 chromosomes. It contains 27140 coding genes, 26973 (99.38%) of which are annotated in at least one functional database. More than 36.05% of the genome regions were identified as repeating elements.
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