Evidence map›Paper›PMID 35713645›Full record

ArticleThe New phytologist2022

Trihelix transcription factors GTL1 and DF1 prevent aberrant root hair formation in an excess nutrient condition.

Michitaro Shibata, David S Favero, Ryu Takebayashi, Arika Takebayashi, Ayako Kawamura, Bart Rymen, Yoichiroh Hosokawa, Keiko Sugimoto

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

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  14. Transcriptome-Wide Integrated Analysis of thePlants (Basel, Switzerland) · 2023
    Article
  15. Coregulation ofFrontiers in plant science · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Michitaro ShibataRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.ORCID 0000-0002-7008-8437
David S FaveroRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.ORCID 0000-0002-6879-0323
Ryu TakebayashiDivision of Materials Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, 630-0192, Japan.
Arika TakebayashiRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.
Ayako KawamuraRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.
Bart RymenRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.ORCID 0000-0003-3651-9579
Yoichiroh HosokawaDivision of Materials Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, 630-0192, Japan.ORCID 0000-0003-2487-9446
Keiko SugimotoRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.ORCID 0000-0002-9209-8230
RIKEN Center for Sustainable Resource Science · JPNara Institute of Science and Technology · JPTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root hair growth is tuned in response to the environment surrounding plants. While most previous studies focused on the enhancement of root hair growth during nutrient starvation, few studies investigated the root hair response in the presence of excess nutrients. We report that the post-embryonic growth of wild-type Arabidopsis plants is strongly suppressed with increasing nutrient availability, particularly in the case of root hair growth. We further used gene expression profiling to analyze how excess nutrient availability affects root hair growth, and found that RHD6 subfamily genes, which are positive regulators of root hair growth, are downregulated in this condition. However, defects in GTL1 and DF1, which are negative regulators of root hair growth, cause frail and swollen root hairs to form when excess nutrients are supplied. Additionally, we observed that the RHD6 subfamily genes are mis-expressed in gtl1-1 df1-1. Furthermore, overexpression of RSL4, an RHD6 subfamily gene, induces swollen root hairs in the face of a nutrient overload, while mutation of RSL4 in gtl1-1 df1-1 restore root hair swelling phenotype. In conclusion, our data suggest that GTL1 and DF1 prevent unnecessary root hair formation by repressing RSL4 under excess nutrient conditions.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantMutationNutrientsPlant RootsTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsNutrientsRSL4 protein, ArabidopsisTranscription FactorsArabidopsis thalianaexcess nutritiongene regulatory networkroot hairstranscription factor

Identifiers

PMID35713645
PMCPMC9544051
OpenAlexW4283023369

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.