Evidence map›Paper›PMID 35713405›Full record

ArticleChembiochem : a European journal of chemical biology2022

Determination of Amide cis/trans Isomers in N-Acetyl-d-glucosamine: Tailored NMR Analysis of the N-Acetyl Group Conformation.

Yan Xue, Gustav Nestor

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yan XueDepartment of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, P.O. Box 7015, 750 07, Uppsala, Sweden.ORCID 0000-0002-4234-1642
Gustav NestorDepartment of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala BioCenter, P.O. Box 7015, 750 07, Uppsala, Sweden.ORCID 0000-0001-8372-8811

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N-Acetyl-d-glucosamine (GlcNAc) is one of the most common amino sugars in nature, but the conformation of its N-acetyl group has drawn little attention. We report herein the first identification of NH protons of the amide cis forms of α- and β-GlcNAc by NMR spectroscopy. Relative quantification and thermodynamic analysis of both cis and trans forms was carried out in aqueous solution. The NH protons were further utilized by adapting protein NMR experiments to measure eight J-couplings within the N-acetyl group, of which six are sensitive to the H2-NH conformation and two are sensitive to the amide conformation. For amide cis and trans forms, the orientation between H2 and NH was determined as anti conformation, while a small percentage of syn conformation was predicted for the amide trans form of β-GlcNAc. This approach holds great promise for the detailed conformational analysis of GlcNAc in larger biomolecules, such as glycoproteins and polysaccharides.

Indexed as

AcetylglucosamineAmidesGlucosamineMagnetic Resonance SpectroscopyProtein ConformationProtonsAcetylglucosamineAmidesGlucosamineProtonsconformational analysisisotopic labellingN-acetylglucosamineNMR spectroscopy

Identifiers

PMID35713405
PMCPMC9541821

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.